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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1440 fasta sequence
[CAGGAGTTCTCTGAATTCTGATGGAAACCAACACTCCTCCAAAGTCTGGGACAAGCTTTCTCAAGACTTGCTTCAATGGTGTCAATGCCCTCTCAGGTGTTGGGATACTATCCATGCCTTACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCTGCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCTACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCATGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGGAGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGAGGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGT-GCTGCCCACGACGT-GGTTCCGGAGCCTCGACCTCCTGGCGTACGTCTCCCT-GGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGTCCGT-GCTCTGGGTCGGCGCCGCCGACGGCGTC-GGGTTCCGCGAGGGCGGCGTGGCGGTGAGGTGGGGTGGCGTCCCGACCGCCATGAGCCTGTACGCGTTCTGCTTCAGTGGCCATGCGGTTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCATCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGTACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCTGCCGGCGAGGAAGCTGAGCTCCAGCATCGCCATCTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCCCGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGCCGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCACCACGGCGGTGGCGCTCGCCGTGCCCTTCTTCGCCTACGTGGTGGCGCTCACCGGCTCGTTCCTCAGCGCCACCGCGACGATGCTGCTGCCGTGCGCGTGCTACCTCCGGATCAGCTCCAGGGCCTCCGGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAAAAAAAAAAAAAAGA]
[+] EMBL AK107472 [CAGGAGTTCTCTGAATTCTGATGGAAACCAACACTCCTCCAAAGTCTGGGACAAGCTTTCTCAAGACTTGCTTCAATGGTGTCAATGCCCTCTCAGGTGTTGGGATACTATCCATGCCTTACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCTGCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCTACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCATGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGGAGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGAGGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGT GCTGCCCACGACGT GGTTCCGGAGCCTCGACCTCCTGGCGTACGTCTCCCT GGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGTCCGT GCTCTGGGTCGGCGCCGCCGACGGCGTC GGGTTCCGCGAGGGCGGCGTGGCGGTGAGGTGGGGTGGCGTCCCGACCGCCATGAGCCTGTACGCGTTCTGCTTCAGTGGCCATGCGGTTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCATCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGTACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCTGCCGGCGAGGAAGCTGAGCTCCAGCATCGCCATCTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCCCGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGCCGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCACCACGGCGGTGGCGCTCGCCGTGCCCTTCTTCGCCTACGTGGTGGCGCTCACCGGCTCGTTCCTCAGCGCCACCGCGACGATGCTGCTGCCGTGCGCGTGCTACCTCCGGATCAGCTCCAGGGCCTCCGGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGT ]
[+] EMBL AU056478 [ CAGGTGTTGGGATACTATCCATGCCTTACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCTGCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCTACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCATGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGGAGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGAGGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGTGGCTGCCCACGAAGTGGGTTCCGGAGCCTNGACCTCCTGGCGTACGTCTCCCTGGGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGTCCGTGGCTCTGGGTCGGCGCCGCGAAAGGNTTCGGGGTTCCGCGAGGGCGGCGTGGCGGTGANGTG ]
[-] EMBL CB620995 [ GCGGTTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCATCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGTACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCT CGGCGAGGAAGNTGAGCTCCAGCATCGCCATTTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCCCGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGCCGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCACCACGGCGGTGGCGCTCGCCGTGCCCTTTTTCGCCTACGTGGTGGCGCTCACCGGCTCGTTCCTCAGCGCCACCGCGACGATGCTGCTGCCGTGCGCGTGCTACCTCCGGATCAGCTCCAGGGCCTCCGGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAAAAAAAAAAAAAAGA]
consensusID : consensus_6948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[CTCGCCGTGCCCTTCTTCGCNTACGTGGTGGCGCTCACCGGCTCCTTTCCTCAGCGCCACCGCGAACGATGCTGCTGCCCGTNCGCGTGCTACCTCCGGATCAGCTCCAGGNCCTCCCGGGAANCTGGGGGTGCCCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAAGATGATTCTACTNGTGGAGATTGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056479 [CTCGCCGTGCCCTTCTTCGCNTACGTGGTGGCGCTCACCGGCTCCTTTCCTCAGCGCCACCGCGAACGATGCTGCTGCCCGTNCGCGTGCTACCTCCGGATCAGCTCCAGGNCCTCCCGGGAANCTGGGGGTGCCCGAGATCGTGGCTTGCGTGGGGATCATCGTGCTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGCTTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAATTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGTTATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAAGATGATTCTACTNGTGGAGATTGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6948#0 CAGGAGTTCTCTGAATTCTGATGGAAACCAACACTCCTCCAAAGTCTGGGACAAGCTTTC 60
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 TCAAGACTTGCTTCAATGGTGTCAATGCCCTCTCAGGTGTTGGGATACTATCCATGCCTT 120
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 ACGCATTGTCCCAGGGAGGATGGCTGAGCCTAGCAATCTTCATAACCATAGCAGCGATCT 180
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 GCTTCTACACGGGGATCCTCCTGCAGCGATGCATCGACTCCAGCTCCCTCGTCAAGACCT 240
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 ACCCGGACATCGGCGAGCTGGCGTTCGGCCGGAAGGGCAGGATCGCCGTCGCCGCCTTCA 300
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 TGTATCTCGAGCTCTACCTCGTCGCCATCGACTTCCTCATCCTGGAGGGGGACAACCTGG 360
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 AGAAGCTGTTCCCGAACGCGAGCTTCTTCTCCTCCTTCCACAGGATCGCCGGCGGGACGA 420
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 GGCAAGGGTTCGTGCTGCTGTTCGCGCTGCTCGTGCTGCCCACGACGTGGTTCCGGAGCC 480
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 TCGACCTCCTGGCGTACGTCTCCCTGGGCGGCGTCCTGGCGTCCGCCATCCTCGTCGCGT 540
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 CCGTGCTCTGGGTCGGCGCCGCCGACGGCGTCGGGTTCCGCGAGGGCGGCGTGGCGGTGA 600
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 GGTGGGGTGGCGTCCCGACCGCCATGAGCCTGTACGCGTTCTGCTTCAGTGGCCATGCGG 660
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 TTTTCCCCATGATTTATACCGGCATGAGGAACAGGAGAATGTTTCCACATGTGCTGCTCA 720
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 TCTGCTTCATCATCTGCACCCTCGCCTACGGCGTGATGGGCGTCATCGGCTACCTCATGT 780
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 ACGGCGGCTCGCTCCGGTCGCAGGTGACGCTCAACCTGCCGGCGAGGAAGCTGAGCTCCA 840
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 GCATCGCCATCTACACGACGCTCATCAACCCCTTCACCAAGTTCGCCCTCCTCATCACCC 900
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 CGATCGCCGAGGCCATCGAGGGCGTCCTCGGCCTCGGCACCGCCACCACCGGCGGCAAGC 960
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 CGGCGCAGTACAGGGCCGCGGCCGTGAGCGTGTCGGTGAGGACGGCGCTGGTGGTGAGCA 1020
consensus_6948#1 ------------------------------------------------------------
consensus_6948#0 CCACGGCGGTGGCGCTCGCCGTGCCCTTCTTCGCCTACGTGGTGGCGCTCACCGGCTCGT 1080
consensus_6948#1 --------------CTCGCCGTGCCCTTCTTCGCNTACGTGGTGGCGCTCACCGGCTCCT 46
******************** *********************** *
consensus_6948#0 T-CCTCAGCGCCACCGCGA-CGATGCTGCTGCC-GTGCGCGTGCTACCTCCGGATCAGCT 1137
consensus_6948#1 TTCCTCAGCGCCACCGCGAACGATGCTGCTGCCCGTNCGCGTGCTACCTCCGGATCAGCT 106
* ***************** ************* ** ***********************
consensus_6948#0 CCAGGGCCTCC-GGGAAGCTGGGGGTGCTCGAGATCGTGGCTTGCGTGGGGATCATCGTG 1196
consensus_6948#1 CCAGGNCCTCCCGGGAANCTGGGGGTGCCCGAGATCGTGGCTTGCGTGGGGATCATCGTG 166
***** ***** ***** ********** *******************************
consensus_6948#0 CTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGC 1256
consensus_6948#1 CTTGGGTTAGGAGTGATCGTGATAGGCACTTACAGCTCGCTGAAACAGATTGTGCAGAGC 226
************************************************************
consensus_6948#0 TTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAA 1316
consensus_6948#1 TTCTGATCATTTATGGGCAAAGGTAGTAGGAGATGAGCAATTGGGATCAGCTACTGAAAA 286
************************************************************
consensus_6948#0 TTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGT 1376
consensus_6948#1 TTGACATATACTAGTCAATTCGATACCACTGATTAGGACAGGTGGTGTCAACCATGATGT 346
************************************************************
consensus_6948#0 TATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAAAAAAAAAAAA 1436
consensus_6948#1 TATGCATAAATCACTTGAGAAAGAAATCCATATGCCGTGTATTCAGGTAGGAAGATGATT 406
************************************************* ** * *
consensus_6948#0 AAGA-------------------------------------------- 1440
consensus_6948#1 CTACTNGTGGAGATTGATTTTTTTTTCAAAAAAAAAAAAAAAAAAAAA 454
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||