cluster # 6952

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Oryza sativa
cluster # 6952 cluster # 6952 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6952#0 length = 256 sequences # 3

consensus_6952#1 length = 226 sequences # 1

consensusID : consensus_6952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 256
fasta sequence

                              [TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGTGATCTACTGATCGATATTTTANC]

[+] EMBL OSR23431A            [TGGCATGAGGNCTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGTGATCTACTGATCGATATTTTANC]
[+] EMBL BI812634             [TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAaaaaa                                   ]
[+] EMBL OSR22611A            [TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGA                                                                                                                                                      ]




>consensus_6952#0
TGGCATGAGGACTGTTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTA
GGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCTGAAGGG
TGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTC
TACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGTGATCTAC
TGATCGATATTTTANC

consensusID : consensus_6952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAGCTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCTGTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGANCGGCTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA]

[+] EMBL BI806851             [TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAGCTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCTGTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGANCGGCTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA]




>consensus_6952#1
TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAG
CTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCT
GTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGANCGG
CTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6952#0      TGGCATGAGGAC-TGTTCGA-TTG-ACAATTTGTA-TGTACATTTCCACCGTTTACGCAG 56
consensus_6952#1      TGGCATGAGGACCTGTTCGAGTTGTACCATTTGTAGNGGACATTTCCCCCGTTTACGCAG 60
                      ************ ******* *** ** *******  * ******** ************

consensus_6952#0      CTTAGGAATTGGACCATAATTAG-TTGTGTACCTGCAAGTTTTG-TATACGAATTATCCT 114
consensus_6952#1      CTTAGGAATTGGACCATAATTANGTTGTGTACCCGCAAGTTTTGGTATACGAATTATCCT 120
                      **********************  ********* ********** ***************

consensus_6952#0      G-AAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCG 173
consensus_6952#1      GTAAGGGTGTTCGGTGGATTGAATATTGCCCCTTTGGTTGTTTTGCGCATTTNGGAN-CG 179
                      * ***************************** ******************   ***  **

consensus_6952#0      GCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAAAAGGGNTTATTATCTGTGT 233
consensus_6952#1      GCTGCTTTACATTTTTTTTATAGGAAATCAGCTTTTGAAAAAAAAAA------------- 226
                      ****** ********* ***************** *** ****                 

consensus_6952#0      GATCTACTGATCGATATTTTANC 256
consensus_6952#1      -----------------------