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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1752 fasta sequence
[CGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCAAACGAAACCCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATCCATCAATGGGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCCCCTGCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGCTGGGCCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAGCGCGGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTTGACCACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCCGCCTCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCACCTCTACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTCGCGCCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGCATCCAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTG-CGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATGAGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATCTGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAAATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAAAATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGAAACCATGAAAGAACGCTACT]
[+] EMBL AK100002 [CGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCAAACGAAACCCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATCCATCAATGGGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCCCCTGCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGCTGGGCCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAGCGCGGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTTGACCACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCCGCCTCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCACCTCTACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTCGCGCCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGCATCCAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCAAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTG CGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATGAGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATCTGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAAATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAAAATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGAAACCATGAAAGAACGCTACT]
[-] EMBL CB663104 [ CAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTG CGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGG TTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATGAGGATC ]
[+] EMBL CA767249 [ ACATAAT NCTCTGCAGTACACAGAGGAAGGCTTACTGACCGTCGATGAGAACCGGGATGGCCCTGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGNGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGAACAGCATGGNGTGGCGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGNACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTACTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCTTGCCTGCTTCTGAAGTTGAGTACTATGATTCGTTTTGTATGCTGATTNGATTAGTGTGNGTTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGGTNATGCTGTGAATTGNTGTGCCGGCATTGTAAACCGGCATTTTGGNATNGCCT ]
consensusID : consensus_6957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[TTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCCTTATGAGCCTTTGATAGCCCCTGTCCTCCCGAATGTTACTCCNGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCCGTTCTAGTCACTGATGGAGTCGAGCCCATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCCAGAGGATCTAACTGTGCGCCCGCCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGCTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCCAAAAAAAAAA]
[+] EMBL BI806815 [TTCTTTTCATGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCCTTATGAGCCTTTGATAGCCCCTGTCCTCCCGAATGTTACTCCNGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTCCCCCCGTTCTAGTCACTGATGGAGTCGAGCCCATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCCAGAGGATCTAACTGTGCGCCCGCCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAGGTTCTGACTGCTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6957#0 CGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCAAACGAAAC 60
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 CCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATCCATCAATG 120
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCCCCT 180
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGCTGG 240
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GCCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAGCGC 300
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTTGAC 360
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 CACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCCGCC 420
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 TCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCACCTC 480
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 TACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTCTAC 540
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTCGCG 600
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 CCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGCATC 660
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 CAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAATGGA 720
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATAATC 780
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 ACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCATGCT 840
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 GCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAAGTT 900
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 TATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTCTTC 960
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 CTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAGGGA 1020
consensus_6957#1 -------------------------------------------TTCTTTTCATGAAGGGA 17
*****************
consensus_6957#0 ACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTCCAG 1080
consensus_6957#1 ACAGCATGGTGTGGTGCTGGTGCCGACCCTTATGAGCCTTTGATAGCCCCTGTCCTCCCG 77
**************************** ******************* ********* *
consensus_6957#0 AATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTC 1140
consensus_6957#1 AATGTTACTCCNGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTTTTTCGCTC 137
*********** ************************************************
consensus_6957#0 CCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTA 1200
consensus_6957#1 CCCCCGTTCTAGTCACTGATGGAGTCGAGCCCATTTTGTAATCTGAGCTAGATTGCTTTA 197
**** ************************** ****************************
consensus_6957#0 TTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCG--CAGGGTCTTGCCTG 1258
consensus_6957#1 TTGAGGAGCAACGTCTATGCCCCAGAGGATCTAACTGTGCGCCCGCCAGGGTCTTGCCTG 257
********************** ******************** **************
consensus_6957#0 CTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGA 1318
consensus_6957#1 CTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGA 317
************************************************************
consensus_6957#0 TAGGTTCTGACTG-TTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTAT 1377
consensus_6957#1 TAGGTTCTGACTGCTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTAT 377
************* **********************************************
consensus_6957#0 GCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCTATTGT 1437
consensus_6957#1 GCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCT----CCAAAAAA 433
************************************************ ** *
consensus_6957#0 GAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGAGAATG 1497
consensus_6957#1 AAAA-------------------------------------------------------- 437
*
consensus_6957#0 AGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATC 1557
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 TGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAA 1617
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 ATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAA 1677
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 AATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGAAACCA 1737
consensus_6957#1 ------------------------------------------------------------
consensus_6957#0 TGAAAGAACGCTACT 1752
consensus_6957#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||