cluster # 696

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Oryza sativa
cluster # 696 cluster # 696 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_696#0 length = 309 sequences # 1

consensus_696#1 length = 308 sequences # 1

consensusID : consensus_696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACCCATTTTACTCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATATCCCCTTTAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGCAAAACTGTTCCCTGGGAAAAAATGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGGAAACAAAAAGGGAAAACCCGGGGGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTGGCCCCCACT]

[+] EMBL CF300686             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAAACCCATTTTACTCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATATCCCCTTTAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGCAAAACTGTTCCCTGGGAAAAAATGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGGAAACAAAAAGGGAAAACCCGGGGGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTGGCCCCCACT]




>consensus_696#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTAACAAAAACCCATTTTACTCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTA
AAACCCGCAAAAATATCCCCTTTAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGC
AAAACTGTTCCCTGGGAAAAAATGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGG
AAACAAAAAGGGAAAACCCGGGGGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTG
GCCCCCACT

consensusID : consensus_696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCCCCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTTTAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAATGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGGGGGCCCCA]

[+] EMBL CF331667             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCCCCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTTTAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAATGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGGGGGCCCCA]




>consensus_696#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCC
CCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTT
TAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAA
TGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGG
GGGCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_696#0      ----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56
consensus_696#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                         ********************************************************

consensus_696#0      TTTTTTTAACA------AAAACCCA----------------------------TTTTACT 82
consensus_696#1      TTTTTTTAAAACCCGGGAAAACCCCCCATTCCCAAACAACCGAAGGGCAAAATTTTTCCC 120
                     ********* *      *******                             **** * 

consensus_696#0      CCTTAAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATATCCCCTT 142
consensus_696#1      CCTTCAACCCATGTAAGGGCCCAAGGGCAAATTTTTTAAAACCCGCAAAAATAACCCCTT 180
                     **** ************************************************ ******

consensus_696#0      TAAGGAGGGGAAATTCTAACCTGGGGGAAAAAAAGGGCAAAACTGTTCCCTGGGAAAAAA 202
consensus_696#1      TAAGGAGGGGAAATTTTAACCTGGGGGAAAAAAAGGCCAAAACTGTTCCCCGGGAAAAAA 240
                     *************** ******************** ************* *********

consensus_696#0      TGTTATCCCCTAAAAATTCCACAAAAAAAACAACCCGGAAACAAAAAGGGAAAACCCGGG 262
consensus_696#1      TGTTACCCCCCCAAAATTCCCCACAAAAAAAAACCCGAAAACAAAAAGGGAAAACCCCGG 300
                     ***** ****  ******** ** ****** ****** ******************* **

consensus_696#0      GGGGCCTAAAAAGGGACCCAACCCACATTAATTGGGTGGCCCCCACT 309
consensus_696#1      GGGCCCCA--------------------------------------- 308
                     *** ** *