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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1303 fasta sequence
[CGAGGATATCACCGTGTCGCTCGACTCCGGCGCGGGCGCGGGCGCGGGCGCGGGCTTCGACGCCGGCGCTTACATGGCGGCGCTCCGGGCGTCCCGCTTCGGGAGGTGGATGCTCTGGTCGCCCAGGCTGGCCTCCACGCACGACCTCGTGACGCAGAATTTCGCCAAGCTTCCGGTGGGCGTCGTCTGCGTCGCCGACGTGCAGTTCAAAGGGAGAGGTCGTTCAAAGAATGTGTGGGAATCACCACCAGGATGTCTCATGTTCTCCTTCACTTCACAGATGGAGGATGCACGGAAACTGCCTCTTATGCAGTACGTTGTCTGCCTTGCCATGACCGAAGCCATCAAAGAACTGTGTTGTGCTAAGGGGCTTTCAGAACTTGATGTTAAAATAAAATGGCCCAATGATCTCTATCTGAAAGGGCTAAAAGTTGGTGGCATTCTTTGTACTTCGTCTTATCAACCAAAAGTATACAATATTTGCACCGGTATTGGTTTAAATGTTGACAATGAGGAGCCTACAACATGTTTGAATGCTGCACTGAAAGAAATGAATGCTAATTTGCCCACATTGAAACGTGAAGACATACTGGCATCATTCTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGAGGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCCTGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTTGTATGCTATTGGCGAGGATGGCAAAAGCTATGAGTTGCACCCTGATGGAAACAGCTTTGATTTCTTTGCAGGGTTAGTGCGAAGGAAGATGGAAACGTAGTTCTACATGAATACATACATAGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAACATGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTTTGAGAAACTGCTACCACCTTTGGGTTTGCTACTGCTAACATGGCGCCATCAGGCACAAGATCAAAATAAGCCTTCCAATTCAAGGTGGGATTAAAGAAAAGAAAAGGAGTTGACCTGTTAAGTCCTGTAGAGACTCAAGGACCAGAAGGAGCCATGCTTTGAGTGAAATGTTTCTGGCTTTCTGCTACCCTTTTGTAAGTTGTAACTTTCTTGAAACAGTGTAACAATGATTGATGCAATAATATATCATCTGAGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB659107 [CGAGGATATCACCGTGTCGCTCGACTCCGGCGCGGGCGCGGGCGCGGGCGCGGGCTTCGACGCCGGCGCTTACATGGCGGCGCTCCGGGCGTCCCGCTTCGGGAGGTGGATGCTCTGGTCGCCCAGGCTGGCCTCCACGCACGACCTCGTGACGCAGAATTTCGCCAAGCTTCCGGTGGGCGTCGTCTGCGTCGCCGACGTGCAGTTCAAAGGGAGAGGTCGTTCAAAGAATGTGTGGGAATCACCACCAGGATGTCTCATGTTCTCCTTCACTTCACAGATGGAGGATGCACGGAAACTGCCTCTTATGCAGTACGTTGTCTGCCTTGCCATGACCGAAGCCATCAAAGAACTGTGTTGTGCTAAGGGGCTTTCAGAACTTGATGTTAAAATAAAATGGCCCAATGATCTCTATCTGAAAGGGCTAAAAGTTGGTGGCATTCTTTGTACTTCGTCTTATCAACCAAAAGTATACAATATTTGCACCGGTATTGGTTTAAATGTTGACAATGAGGAGCCTACAACATGTTTGAATGCTGCACTGAAAGAAATGAATGCTAATTTGCCCACATTGAAACGTGAAGACATACTGGCATCATTCTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGAGGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCCTGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTTGTATGCTATTGGCGAGGATGGCA ]
[-] EMBL CB659108 [ AATGCTGCACTGAAAGAAATGAATGCTAATTTGCCCACATTGAAACGTGAAGACATACTGGCATCATTCTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGAGGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCCTGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTTGTATGCTATTGGCGAGGATGGCAAAAGCTATGAGTTGCACCCTGATGGAAACAGCTTTGATTTCTTTGCAGGGTTAGTGCGAAGGAAGATGGAAACGTAGTTCTACATGAATACATACATAGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAACATGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTTTGAGAAACTGCTACCACCTTTGGGTTTGCTACTGCTAACATGGCGCCATCAGGCACAAGATCAAAATAAGCCTTCCAATTCAAGGTGGGATTAAAGAAAAGAAAAGGAGTTGACCTGTTAAGTCCTGTAGAGACTCAAGGACCAGAAGGAGCCATGCTTTGAGTGAAATGTTTCTGGCTTTCTGCTACCCTTTTGTAAGTTGTAACTTTCTTGAAACAGTGTAACAATGATTGATGCAATAATATATCATCT ]
[+] EMBL AU057188 [ AGATGGAAACGTAGTTCTACATGAATNCATACATAGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAACNTGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTTTGAGAAACTGCTNCCCCCTTTGGGTTTGCTACTGCTAACATGGCNCCATCAGGCACAAGATCAAAATAAGCCTTCCAATTCAAGGTGGGATTAAAGAAAAGAAAAGGAGTTGNCCTGTTAAGTCCTGTAGAGACTCAAGGNCCAGAAGGAGCCATGCTTTGAGTGAAATGTTTCTGGCTTTCTGCTACCCTTTTGTAAGTTGTAACTTTCTTGAAACAGTGTAACAATGATTGATGCAATAATATATCATCTGAGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[GCCCACATTGAAACGTGAAGACATACTGGCATCATTCTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGAGGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCCTGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTTGTATGCTATTGGCGAGGATGGCAAAAGCTATGAGTTGCACCCTGATGGAAACAGGGTTAGTGCGAAGGAAGATGGAAACGTAGTTCTACATGAATACATACATAGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAACATGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTT]
[+] EMBL AU057187 [GCCCACATTGAAACGTGAAGACATACTGGCATCATTCTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGAGGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCCTGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTTGTATGCTATTGGCGAGGATGGCAAAAGCTATGAGTTGCACCCTGATGGAAACAGGGTTAGTGCGAAGGAAGATGGAAACGTAGTTCTACATGAATACATACATAGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAACATGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6966#0 CGAGGATATCACCGTGTCGCTCGACTCCGGCGCGGGCGCGGGCGCGGGCGCGGGCTTCGA 60
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 CGCCGGCGCTTACATGGCGGCGCTCCGGGCGTCCCGCTTCGGGAGGTGGATGCTCTGGTC 120
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 GCCCAGGCTGGCCTCCACGCACGACCTCGTGACGCAGAATTTCGCCAAGCTTCCGGTGGG 180
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 CGTCGTCTGCGTCGCCGACGTGCAGTTCAAAGGGAGAGGTCGTTCAAAGAATGTGTGGGA 240
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 ATCACCACCAGGATGTCTCATGTTCTCCTTCACTTCACAGATGGAGGATGCACGGAAACT 300
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 GCCTCTTATGCAGTACGTTGTCTGCCTTGCCATGACCGAAGCCATCAAAGAACTGTGTTG 360
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 TGCTAAGGGGCTTTCAGAACTTGATGTTAAAATAAAATGGCCCAATGATCTCTATCTGAA 420
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 AGGGCTAAAAGTTGGTGGCATTCTTTGTACTTCGTCTTATCAACCAAAAGTATACAATAT 480
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 TTGCACCGGTATTGGTTTAAATGTTGACAATGAGGAGCCTACAACATGTTTGAATGCTGC 540
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 ACTGAAAGAAATGAATGCTAATTTGCCCACATTGAAACGTGAAGACATACTGGCATCATT 600
consensus_6966#1 ------------------------GCCCACATTGAAACGTGAAGACATACTGGCATCATT 36
************************************
consensus_6966#0 CTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGA 660
consensus_6966#1 CTTCAATAAATTTGAAGTTCTTTTTGAGATCTTTACAAATGAAGGATTTCAGGCGCTTGA 96
************************************************************
consensus_6966#0 GGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCC 720
consensus_6966#1 GGAACAGTACTACAATTCATGGCTTCATAGTGGACAGAAGGTCGTTGTGCAGGATGGGCC 156
************************************************************
consensus_6966#0 TGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTT 780
consensus_6966#1 TGAAGCCCAGCATGCAGACAGTGTGGTTACTATTCAGGGGTTGACACCAGCTGGGTACTT 216
************************************************************
consensus_6966#0 GTATGCTATTGGCGAGGATGGCAAAAGCTATGAGTTGCACCCTGATGGAAACAGCTTTGA 840
consensus_6966#1 GTATGCTATTGGCGAGGATGGCAAAAGCTATGAGTTGCACCCTGATGGAAACAG------ 270
******************************************************
consensus_6966#0 TTTCTTTGCAGGGTTAGTGCGAAGGAAGATGGAAACGTAGTTCTACATGAATACATACAT 900
consensus_6966#1 -----------GGTTAGTGCGAAGGAAGATGGAAACGTAGTTCTACATGAATACATACAT 319
*************************************************
consensus_6966#0 AGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAA 960
consensus_6966#1 AGGTAGAAGAGCAGTGTACAATAATGGATAGAAGGCTGCTAAAATCCACATACTTGTAAA 379
************************************************************
consensus_6966#0 CATGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTTTGAGAAACTGCTACCACCTT 1020
consensus_6966#1 CATGAGGGGTTGAAATGTTTTCAACTATGTAAATTAACTT-------------------- 419
****************************************
consensus_6966#0 TGGGTTTGCTACTGCTAACATGGCGCCATCAGGCACAAGATCAAAATAAGCCTTCCAATT 1080
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 CAAGGTGGGATTAAAGAAAAGAAAAGGAGTTGACCTGTTAAGTCCTGTAGAGACTCAAGG 1140
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 ACCAGAAGGAGCCATGCTTTGAGTGAAATGTTTCTGGCTTTCTGCTACCCTTTTGTAAGT 1200
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 TGTAACTTTCTTGAAACAGTGTAACAATGATTGATGCAATAATATATCATCTGAGCTTGT 1260
consensus_6966#1 ------------------------------------------------------------
consensus_6966#0 TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1303
consensus_6966#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||