These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 767 fasta sequence [CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCGGGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGC-TGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCC-GGTGGTGGAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGG-AGGTTTC-TGGGATGCTG-CAAAAC-AAAC-TCTTC-TTACGATCGTCGGTATTATCG-CCGCGTTTTT-CCTGATTGCAAACTT-CAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCT-CAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA] [+] EMBL C73480 [CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCGGGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGC TGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGGTGGTGGAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAAGGTTTCTTGGGATGCTG CAAAACAAAACTTTTTC TNACGATCGTCGGTATTATCG CCGNGTTTTT CCTGANTGCAAACTT CAATNTGCTG ] [+] EMBL AU094319 [ ACATCTCGATCTCGATGCGGAAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGCTTGCTTCTTNTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAANCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGCCTCCTTCAGCC GGTGGTGGAGGATGGTCTGGAGGAGGTGGTTGGTTCAGGTGGTTCAGCAGTGG AGGTTTC TGGGATGCTG CAAAAC AAAC TCTTC TTACGATCGTCGGTATTATCG CCGCGTTTTT CCTGATTGCAAACTT CAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCT CAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA] [+] EMBL C99129 [ TTCCAGTGGTTCCACCNTGG ANGTTTC TGGGATGCTGCCAAAAC AAC TCTTCTTTACGATCGTCGGTATTATCGCCCGCGTTTTTCCCTGATTGC AACTTCCAATGTGCTGGTAGCAGCTATTGTAAA TCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCTCCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA] consensusID : consensus_6973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAGTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATGCNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGTGGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCGCGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT] [+] EMBL AU163720 [CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAGTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATGCNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGTGGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCGCGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6973#0 CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCG 60 consensus_6973#1 ---CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCC-TCTTCTTCGCCGCCG 56 ************************************ **** *************** consensus_6973#0 GGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT 120 consensus_6973#1 GGAGT-CCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT 115 **** ****************************************************** consensus_6973#0 ACGGTGGCTTCGCCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA 180 consensus_6973#1 ACGGTGG-TTCGCC-GCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA 173 ******* ****** ********************************************* consensus_6973#0 AGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTC 240 consensus_6973#1 AGCAGGATGAAN-TAGGAA--CAGTGGAAA-TGCC-TGGGGTGGAAGAAGACGGGG-TTC 227 *********** ****** ********* **** ******************** *** consensus_6973#0 CAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGTGGTG 300 consensus_6973#1 CAAAATTGGG-ATGCNA-TTGAAAGAAGGCAGCAAAGCT--GCTCCTTCAGC-GGTGGTG 282 ********** **** * ******************* ********** ******* consensus_6973#0 GAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAGGTTTCTGGGATG 360 consensus_6973#1 GAG-ATGGTCTGGAG-ANGTGGTTG-TTCANGTGGT-CAACAGTGAAG--TTCTTGGATG 336 *** ******* *** * ** **** **** ***** ** ***** ** **** ***** consensus_6973#0 CTGCAAAACAAACTCTTCTTACGATCGTCGGTATTATCGCCGCGTTTTTCCTGATTGCAA 420 consensus_6973#1 CTGCAAAC--AACTCTTCTTACN-TCGCGGATAT------CGCGCGTTTCCTAATTN--A 385 ******* ************ *** * *** **** ****** *** * consensus_6973#0 ACTTCAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTC 480 consensus_6973#1 ACTT-AATGT-CTGGNAC--ACTATTGNAATCACTCT----------------------- 418 **** ***** **** * ****** ** * ** consensus_6973#0 GGCGTGCACTGTCATTCGTAGCTCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGA 540 consensus_6973#1 ------------------------------------------------------------ consensus_6973#0 GGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAG 600 consensus_6973#1 ------------------------------------------------------------ consensus_6973#0 TTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGAT 660 consensus_6973#1 ------------------------------------------------------------ consensus_6973#0 CTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCA 720 consensus_6973#1 ------------------------------------------------------------ consensus_6973#0 CCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA 767 consensus_6973#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||