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Oryza sativa
cluster # 6973 cluster # 6973       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6973#0 length = 767 sequences # 3  
consensus_6973#1 length = 418 sequences # 1  

consensusID : consensus_6973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 767
fasta sequence
                              [CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCGGGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGC-TGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCC-GGTGGTGGAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGG-AGGTTTC-TGGGATGCTG-CAAAAC-AAAC-TCTTC-TTACGATCGTCGGTATTATCG-CCGCGTTTTT-CCTGATTGCAAACTT-CAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCT-CAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA]

[+] EMBL C73480               [CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCGGGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGC TGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGGTGGTGGAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAAGGTTTCTTGGGATGCTG CAAAACAAAACTTTTTC TNACGATCGTCGGTATTATCG CCGNGTTTTT CCTGANTGCAAACTT CAATNTGCTG                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU094319             [                                                                             ACATCTCGATCTCGATGCGGAAGGAATCTAGTCTCCGTCTCCTACGGTGGCTTCGCCCGCGCGTGCTTGCTTCTTNTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAAGCTAGGAAANCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGCCTCCTTCAGCC GGTGGTGGAGGATGGTCTGGAGGAGGTGGTTGGTTCAGGTGGTTCAGCAGTGG AGGTTTC TGGGATGCTG CAAAAC AAAC TCTTC TTACGATCGTCGGTATTATCG CCGCGTTTTT CCTGATTGCAAACTT CAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCT CAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA]
[+] EMBL C99129               [                                                                                                                                                                                                                                                                                                                                        TTCCAGTGGTTCCACCNTGG ANGTTTC TGGGATGCTGCCAAAAC  AAC TCTTCTTTACGATCGTCGGTATTATCGCCCGCGTTTTTCCCTGATTGC AACTTCCAATGTGCTGGTAGCAGCTATTGTAAA TCACTGCTGGCTGTGCTGCGGCAAATTCGGCGTGCACTGTCATTCGTAGCTCCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGAGGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAGTTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGATCTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCACCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA]


>consensus_6973#0 CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCG GGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT ACGGTGGCTTCGCCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA AGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTC CAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGTGGTG GAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAGGTTTCTGGGATG CTGCAAAACAAACTCTTCTTACGATCGTCGGTATTATCGCCGCGTTTTTCCTGATTGCAA ACTTCAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTC GGCGTGCACTGTCATTCGTAGCTCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGA GGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAG TTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGAT CTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCA CCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA



consensusID : consensus_6973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence
                              [CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAGTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATGCNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGTGGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCGCGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT]

[+] EMBL AU163720             [CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAGTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGTGGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGATGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATGCNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGTGGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCGCGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT]


>consensus_6973#1 CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCCTCTTCTTCGCCGCCGGGAG TCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCTACGGT GGTTCGCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCAAGCAGGA TGAANTAGGAACAGTGGAAATGCCTGGGGTGGAAGAAGACGGGGTTCCAAAATTGGGATG CNATTGAAAGAAGGCAGCAAAGCTGCTCCTTCAGCGGTGGTGGAGATGGTCTGGAGANGT GGTTGTTCANGTGGTCAACAGTGAAGTTCTTGGATGCTGCAAACAACTCTTCTTACNTCG CGGATATCGCGCGTTTCCTAATTNAACTTAATGTCTGGNACACTATTGNAATCACTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6973#0      CTCCTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGNCCCCCTCTTCTTCGCCGCCG 60
consensus_6973#1      ---CTCCGCAACTCCGCGCTTTCCGCCGCGATGGCGACGCCCCC-TCTTCTTCGCCGCCG 56
                         ************************************ **** ***************

consensus_6973#0      GGAGNTCCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT 120
consensus_6973#1      GGAGT-CCTCTCGCGCTACATCTCGATCTCGATGCGGGAGGAATCTAGTCTCCGTCTCCT 115
                      ****  ******************************************************

consensus_6973#0      ACGGTGGCTTCGCCCGCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA 180
consensus_6973#1      ACGGTGG-TTCGCC-GCGCGTGCTGCCTCTTCTCCGCCGCCGGCAGCCGCAGCCGCAGCA 173
                      ******* ****** *********************************************

consensus_6973#0      AGCAGGATGAAGCTAGGAAAGCAGTGGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTC 240
consensus_6973#1      AGCAGGATGAAN-TAGGAA--CAGTGGAAA-TGCC-TGGGGTGGAAGAAGACGGGG-TTC 227
                      ***********  ******  ********* **** ******************** ***

consensus_6973#0      CAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGNCTCCTTCAGCCGGTGGTG 300
consensus_6973#1      CAAAATTGGG-ATGCNA-TTGAAAGAAGGCAGCAAAGCT--GCTCCTTCAGC-GGTGGTG 282
                      ********** **** * *******************     ********** *******

consensus_6973#0      GAGGATGGTCTNGAGGAGGTNGTTGGTTCAGGTGGTTCAGCAGTGGAGGTTTCTGGGATG 360
consensus_6973#1      GAG-ATGGTCTGGAG-ANGTGGTTG-TTCANGTGGT-CAACAGTGAAG--TTCTTGGATG 336
                      *** ******* *** * ** **** **** ***** ** ***** **  **** *****

consensus_6973#0      CTGCAAAACAAACTCTTCTTACGATCGTCGGTATTATCGCCGCGTTTTTCCTGATTGCAA 420
consensus_6973#1      CTGCAAAC--AACTCTTCTTACN-TCGCGGATAT------CGCGCGTTTCCTAATTN--A 385
                      *******   ************  ***  * ***      ****  ****** ***   *

consensus_6973#0      ACTTCAATGTGCTGGTAGCAGCTATTGTAAATTCACTGCTGGCTGTGCTGCGGCAAATTC 480
consensus_6973#1      ACTT-AATGT-CTGGNAC--ACTATTGNAATCACTCT----------------------- 418
                      **** ***** **** *    ****** **   * **                       

consensus_6973#0      GGCGTGCACTGTCATTCGTAGCTCAGTGTATTCTTCAGGGCGTACAATCCTCGGCTCCGA 540
consensus_6973#1      ------------------------------------------------------------
                                                                                  

consensus_6973#0      GGCGATCATCCCCTTCTCTAGACACTGGCAATCAGGCCGCTGTGGTTGTGAAAGATAGAG 600
consensus_6973#1      ------------------------------------------------------------
                                                                                  

consensus_6973#0      TTGGAAAGTCAGCGAAAGAGAGAGTTGTAAGGAAATGGGGGAATGGCGTATAACACAGAT 660
consensus_6973#1      ------------------------------------------------------------
                                                                                  

consensus_6973#0      CTACCCTGTCTTATGAGCCGCATAATTTTTGTTCTTGCTGTGTTGAGCGCTTTGCGACCA 720
consensus_6973#1      ------------------------------------------------------------
                                                                                  

consensus_6973#0      CCATAACTTGTTCTATGATCTTGTTTGAGAAGAAAAAACGATAAAAA 767
consensus_6973#1      -----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)