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Oryza sativa
cluster # 6974 cluster # 6974       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6974#0 length = 800 sequences # 4  

consensusID : consensus_6974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 800
fasta sequence
                              [TCTTTTTTTTCCATCCGACAGAGTGTATATATCATTCCTTTCCTTTCCATTCCAGTTATATCTCTACATATATATCTGTTTCGTGCGTGTGGTTACAATTACATCATCTATCTGTACAGCCAGCAACGCTGTCGATCTCTTCTTCCGCTCTTTTGTTGGTTGGTGTTGCCCAAGTAACAAGTGAAGACGGACGGGCAACACAAAAAATGAACAATTCAATGCATGCCAACAATATATATATAGTAGCCAACCAAAAATCTCTGTCCATCATCAGGAATTCAGGGATGGACCAGAGGCAGCTCAGCTCCCTTGCATAACTAGATCAATCAGCGATCCGTCCGTAACGCCTGCGTGCCTCTTGCCTGGTTGTCCATGCGCGCCCTTCGTACCGCCTGCTGGATTTGACGCTCGTGTTCTTTGAGAATCTCCTCCATGTTACCTCCGTGAGGCATCAACGGCCCAGAGTAGTGGATCCTGTTCTTCTTACTGCCATTCACCTGATGATACGCCATACATGCCTCCACGTTCGCTCTCATGACCACAGTATGCTCCTTGTTAGCCGCCCCACCTTCCTTCCGATGGGAAGATGACGGTCTTTCTTGAAACTGGTGTGTCCATTCAGATCTACCGGAGGAATCAACAGCAGTTAATTGCCTGTACCTTGACCTAGATGGATGCTCTCTCAAATGTGGCCTCTTGGCACCATCCCCATGGTTAGATGACCGAGTAGCACCGCCTCGTGGCTCAGCAGCACAAGACAAGTTCGGCATCTGAGATGTGTAAAATCTTTGGGTCTTTTC]

[+] EMBL CB677360             [TCTTTTTTTTCCATCCGACAGAGTGTATATATCATTCCTTTCCTTTCCATTCCAGTTATATCTCTACATATATATCTGTTTCGTGCGTGTGGTTACAATTACATCATCTATCTGTACAGCCAGCAACGCTGTCGATCTCTTCTTCCGCTCTTTTGTTGGTTGGTGTTGCCCAAGTAACAAGTGAAGACGGACGGGCAACACAAAAAATGAACAATTCAATGCATGCCAACAATATATATATAGTAGCCAACCAAAAATCTCTGTCCATCATCAGGAATTCAGGGATGGACCAGAGGCAGCTCAGCTCCCTTGCATAACTAGATCAATCAGCGATCCGTCCGTAACGCCTGCGTGCCTCTTGCCTGGTTGTCCATGCGCGCCCTTCGTACCGCCTGCTGGATTTGACGCTCGTGTTCTTTGAGAATCTCCTCCATGTTACCTCCGTGAGGCATCAACGGCCCAGAGTAGTGGATCCTGTTCTTCTTACTGCCATTCACCTGATGATACGCCATACATGCCTCCACGTTCGCTCTCATGACCACAGTATGCTCCTTGTTAGCCGCCCCACCTTCCTTCCGATGGGAAGATGACGGTCTTTCTTGAAACTGGTGTGTCCATTCAGATCTACCGGAGGAATCAACAGCAGTTAATTGCCTGTACCTTGACCTAGATGGATGCTCTCTCAAATGTGGCCTCTTGGCACCATCCCCATGGTTAGATGACCGAGTAGCACCGCCTCGTGGCTCAGCAGCACAAGACAAGTTCGGCATCTGAGATGTGTA                  ]
[+] EMBL CB636060             [               CGACAAAGTGTATTTTTCATTCCTTTCCTTTCCATTCCAGTTATATCTCTACATATATATCTGTTTCGTGCGTGTGGTTACAATTACATCATCTATCTGTACAGCCAGCAACGCTGTCGATCTCTTCTTCCGCTCTTTTGTTGGTTGGTGTTGCCCAAGTAACAAGTGAAGACGGACGGGCAACACAAAAAATGAACAATTCAATGCATGCCAACAATATATATATAGTAGCCAACCAAAAATCTCTGTCCATCATCAGGAATTCAGGGATGGACCAAAGGCAGCTCAGCTCCCTTGCATAACTAGATCAATCAGCGATCCGTCCGTAACGCCTGCGTGCCTCTTGCCTGGTTGTCCATGCGCGCCCTTCGTACCGCCTGCTGGATTTGACGCTCGTGTTCTTTGAGAATCTCCTCCATGTTACCTCCGTGAGGCATCAACGGCCCAGAGTAGTGGATCCTGTTCTTCTTACTGCCATTCACCTGATGATACGCCATACATGCCTCCACGTTCGCTCTCATGACCACAGTATGCTCCTTGTTAGCCGCCCCACCTTCCTTCCGATGGGAAGATGACGGTCTTTCTTGAAACTGGTGTGTCCATTCAa                                                                                                                                                                                  ]
[+] EMBL CB636030             [                        GTATATTTCATTCCTTTCCTTTCCATTCCAGTTATATCTCTACATATATATCTGTTTCGTGCGTGTGGTTACAATTACATCATCTATCTGTACAGCCAGCAACGCTGTCGATCTCTTCTTCCGCTCTTTTGTTGGTTGGTGTTGCCCAAGTAACAAGTGAATACGGACGGGCAACACAAAAAATGAACAATTCAATGCATGCCAACAATATATATATAGTAGCCAACCAAAAATCTCTGTCCATCATCAGGAATTCAGGGATGGACCAGAGGCAGCTCAGCTCCCTTGCATAACTAGATCAATCAGCGATCCGTCCGTAACGCCTGCGTGCCTCTTGCCTGGTTGTCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB652734             [                         gATATATCATTCCTTTCCTTTCCATTCCAGTTACATTTCTACATATATATCTGTTTCGTGCGTGTGGTTACAATTACATCATCTATCTGTACAGCCAGCAACGCTGTCGATCTCTTCTTCCGCTCTTTTGTTGGTTGGTGTTGCCCAAGTAACAAGTGAAGACGGACGGGCAACACAAAAAATGAACAATTCAATGCATGCCAACAATATATATATAGTAGCCAACCAAAAATCTCTGTCCATCATCAGGAATTCAGGGATGGACCAGAGGCAGCTCAGCTCCCTTGCATAACTAGATCAATCAGCGATCCGTCCGTAACGCCTGCGTGCCTCTTGCCTGGTTGTCCATGCGCGCCCTTCGTACCGCCTGCTGGATTTGACGCTCGTGTTCTTTGAGAATCTCCTCCATGTTACCTCCGTGAGGCATCAACGGCCCAGAGTAGTGGATCCTGTTCTTCTTACTGCCATTCACCTGATGATACGCCATACATGCCTCCACGTTCGCTCTCATGACCACAGTATGCTCCTTGTTAGCCGCCCCACCTTCCTTCCGATGGGAAGATGACGGTCTTTCTTGAAACTGGTGTGTCCATTCAGATCTACCGGAGGAATCAACAGCAGTTAATTGCCTGTACCTTGACCTAGATGGATGCTCTCTCAAATGTGGCCTCTTGGCACCATCCCCATGGTTAGATGACCGAGTAGCACCGCCTCGTGGCTCAGCAGCACAAGACAAGTTCGGCATCTGAGATGTGTAAAATCTTTGGGTCTTTTC]


>consensus_6974#0 TCTTTTTTTTCCATCCGACAGAGTGTATATATCATTCCTTTCCTTTCCATTCCAGTTATA TCTCTACATATATATCTGTTTCGTGCGTGTGGTTACAATTACATCATCTATCTGTACAGC CAGCAACGCTGTCGATCTCTTCTTCCGCTCTTTTGTTGGTTGGTGTTGCCCAAGTAACAA GTGAAGACGGACGGGCAACACAAAAAATGAACAATTCAATGCATGCCAACAATATATATA TAGTAGCCAACCAAAAATCTCTGTCCATCATCAGGAATTCAGGGATGGACCAGAGGCAGC TCAGCTCCCTTGCATAACTAGATCAATCAGCGATCCGTCCGTAACGCCTGCGTGCCTCTT GCCTGGTTGTCCATGCGCGCCCTTCGTACCGCCTGCTGGATTTGACGCTCGTGTTCTTTG AGAATCTCCTCCATGTTACCTCCGTGAGGCATCAACGGCCCAGAGTAGTGGATCCTGTTC TTCTTACTGCCATTCACCTGATGATACGCCATACATGCCTCCACGTTCGCTCTCATGACC ACAGTATGCTCCTTGTTAGCCGCCCCACCTTCCTTCCGATGGGAAGATGACGGTCTTTCT TGAAACTGGTGTGTCCATTCAGATCTACCGGAGGAATCAACAGCAGTTAATTGCCTGTAC CTTGACCTAGATGGATGCTCTCTCAAATGTGGCCTCTTGGCACCATCCCCATGGTTAGAT GACCGAGTAGCACCGCCTCGTGGCTCAGCAGCACAAGACAAGTTCGGCATCTGAGATGTG TAAAATCTTTGGGTCTTTTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)