These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1761 fasta sequence [CTCCCTTCTCTCTCTTCCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCCCCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCCGCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGTGTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCCATTGCGGGGTGTGGCGCACACCACACCCCCCTCATCGCCGCTGGACCGGCATCTCTGCGTGTGATTGTGTCCGAGAAGAAAGAGGAAGTCGTCGTGCGTGCGTCCCCTCGGCGTCGACTGCTGTATTGATGCGATGGAGCAGCGTGAGGATCATACCAAATCATCAGAACCTGCATTCATTCCATCCAAAAGGACTCATCAGATGAGAAACATATGGGCATGGGGAGGTCCTTCTTCAACTACAGTCAACGGATCAAGTGACGCGGTCTTGTTCTCCAGCTCGTTGCCATCAGTTCTGCAATTTGGAAAACTGCCAGGTAAAGAAAGGGAGTACAATGCTCAACCAAAGGATGATATGTTTCCCATGATGAAGCAGCCAGGCACTAATGCTAGAGTGGCTGACCCCATGGATGATGTAGCACAGCATTTGATTGGAAATCTGTTACCAGATGATGAAGAGCTATTGGCTGGGGTAATTGAAGATTTTGATCATGTTAAACTGAGAACCCAAGTTGAGGAATCAGAAGAATATGATGTTTTCCGCAATAGTGGGGGTATGGAGCTGGATATTGACCCTCTGGAAAGCATCACCTTTGGTACAGCAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAATCAGTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGTTTGAGCCATTTGGGGATATTCGGTCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAGCGACACCATAGATTTATTGAGTTCTATGATGTTAGGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACAAAGCATAATTCATTTCAGATTGGTTCACCTTCTGCCAACTCTCCACCAAGTTTGTGGTCCCAACTTGGCAGCCCAACAGATGAAAATAAATTAAATGCACTCAATGAAACTGCATTTAATGGGGGAATGAGCCCTTTGGGCAGTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGAGCTCCTATTGGAATAACCGTGCTGACAACATATTCCATGGGTCACCAACTTTGCACAATTCACATTCGTTTCCAGAACATCATGG] [+] EMBL AK068695 [CTCCCTTCTCTCTCTTCCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCCCCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCCGCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGTGTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCCATTGCGGGGTGTGGCGCACACCACACCCCCCTCATCGCCGCTGGACCGGCATCTCTGCGTGTGATTGTGTCCGAGAAGAAAGAGGAAGTCGTCGTGCGTGCGTCCCCTCGGCGTCGACTGCTGTATTGATGCGATGGAGCAGCGTGAGGATCATACCAAATCATCAGAACCTGCATTCATTCCATCCAAAAGGACTCATCAGATGAGAAACATATGGGCATGGGGAGGTCCTTCTTCAACTACAGTCAACGGATCAAGTGACGCGGTCTTGTTCTCCAGCTCGTTGCCATCAGTTCTGCAATTTGGAAAACTGCCAGGTAAAGAAAGGGAGTACAATGCTCAACCAAAGGATGATATGTTTCCCATGATGAAGCAGCCAGGCACTAATGCTAGAGTGGCTGACCCCATGGATGATGTAGCACAGCATTTGATTGGAAATCTGTTACCAGATGATGAAGAGCTATTGGCTGGGGTAATTGAAGATTTTGATCATGTTAAACTGAGAACCCAAGTTGAGGAATCAGAAGAATATGATGTTTTCCGCAATAGTGGGGGTATGGAGCTGGATATTGACCCTCTGGAAAGCATCACCTTTGGTACAGCAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAATCAGTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGTTTGAGCCATTTGGGGATATTCGGTCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAGCGACACCATAGATTTATTGAGTTCTATGATGTTAGGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACAAAGCATAATTCATTTCAGATTGGTTCACCTTCTGCCAACTCTCCACCAAGTTTGTGGTCCCAACTTGGCAGCCCAACAGATGAAAATAAATTAAATGCACTCAATGAAACTGCATTTAATGGGGGAATGAGCCCTTTGGGCAGTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGAGCTCCTATTGGAATAACCGTGCTGACAACATATTCCATGGGTCACCAACTTTGCACAATTCACATTCGTTTCCAG ] [+] EMBL CB636073 [ CCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCCCCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCCGCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGTGTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCC ] [+] EMBL CB642649 [ GGGAATGAGCCCTTTGGGCAGTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGAGCTCCTATTGGAATAACCGTTCTGACAACATATTCCATGGGTCACCAACTTTGCACAATTCACATTCGTTTCCAGAACATCATGG] consensusID : consensus_6976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [GATACTTTAAATCTGGAAAGCATCACCTTTGGTACAACAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAAGTCATTTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGCTTGAGCCATTTGGGGATATTCGGGCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATCTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAACGACACCATAGATTTATTGAGTTCTATGATGTTATGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACACAGCATGATTCATTTCAGATTGGTGCACCTTCTGCCAACTCTCCAC] [+] EMBL CB645669 [GATACTTTAAATCTGGAAAGCATCACCTTTGGTACAACAAAGGCTAGCCTTGTCAATGGTACTGGAAGTAGCACTAAGTCATTTACAGCATCCAAAATGGTGCTGGAACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTTCCAGGACATTGTTCGTTCGGAACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGCTTGAGCCATTTGGGGATATTCGGGCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATATCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAACTTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAACCCTGGTGATCTTTAATCTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTGGTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAACGACACCATAGATTTATTGAGTTCTATGATGTTATGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACATTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTATACAGCATTTTAATCACGAATTTGAGCAAGACGAAACACAGCATGATTCATTTCAGATTGGTGCACCTTCTGCCAACTCTCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6976#0 CTCCCTTCTCTCTCTTCCCTCTCAACTCCTCTCTCTCTCTCCTTCGTCGTCTCCTCCTCC 60 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 CCCTCTGCTCCTCCCCCTCGTGGCGCCTCCGGCTTGCCGCGCGCGCCCGCCCGCCCGCCC 120 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GCGCCCACCGGCGCGAGCCGAGGGTACACGAGGAGTTCGGCCTTTCCGGTTTCCGGTTGT 180 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GTTGTGAGGAGTGGCGGCGGCGGCGGCGAGGCGGCGACGAGGCGACGCCATTGCGGGGTG 240 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 TGGCGCACACCACACCCCCCTCATCGCCGCTGGACCGGCATCTCTGCGTGTGATTGTGTC 300 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 CGAGAAGAAAGAGGAAGTCGTCGTGCGTGCGTCCCCTCGGCGTCGACTGCTGTATTGATG 360 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 CGATGGAGCAGCGTGAGGATCATACCAAATCATCAGAACCTGCATTCATTCCATCCAAAA 420 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GGACTCATCAGATGAGAAACATATGGGCATGGGGAGGTCCTTCTTCAACTACAGTCAACG 480 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GATCAAGTGACGCGGTCTTGTTCTCCAGCTCGTTGCCATCAGTTCTGCAATTTGGAAAAC 540 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 TGCCAGGTAAAGAAAGGGAGTACAATGCTCAACCAAAGGATGATATGTTTCCCATGATGA 600 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 AGCAGCCAGGCACTAATGCTAGAGTGGCTGACCCCATGGATGATGTAGCACAGCATTTGA 660 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 TTGGAAATCTGTTACCAGATGATGAAGAGCTATTGGCTGGGGTAATTGAAGATTTTGATC 720 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 ATGTTAAACTGAGAACCCAAGTTGAGGAATCAGAAGAATATGATGTTTTCCGCAATAGTG 780 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GGGGTATGGAGCTGGATATTGACCCTCTGGAAAGCATCACCTTTGGTACAGCAAAGGCTA 840 consensus_6976#1 --------------GATACTTTAAATCTGGAAAGCATCACCTTTGGTACAACAAAGGCTA 46 **** * ************************* ********* consensus_6976#0 GCCTTGTCAATGGTACTGGAAGTAGCACTAA-TCAGT-ACAGCATCCAAAATGGTGCTGG 898 consensus_6976#1 GCCTTGTCAATGGTACTGGAAGTAGCACTAAGTCATTTACAGCATCCAAAATGGTGCTGG 106 ******************************* *** * ********************** consensus_6976#0 AACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGT-CCAGGACATTGTTCGTTCGGA 957 consensus_6976#1 AACAGTTACTGGTGAGCATCCTTATGGTGAGCACCCGTTCCAGGACATTGTTCGTTCGGA 166 ************************************** ********************* consensus_6976#0 ACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGTTTGAGCCATTTGGGGATA 1017 consensus_6976#1 ACATTAATAGTAATGTTGAAGACTCAGAACTGCGCTCATTGCTTGAGCCATTTGGGGATA 226 ***************************************** ****************** consensus_6976#0 TTCGGTCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATA 1077 consensus_6976#1 TTCGGGCCATGTACACTGCAACGAAACACAGAGGATTCGTTATGATATCTTACTACGATA 286 ***** ****************************************************** consensus_6976#0 TCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAAC 1137 consensus_6976#1 TCCGTCATGCAAGAAATGCAAAGACTGCATTGCAAAGTAAACCATTAAGGAGGAGGAAAC 346 ************************************************************ consensus_6976#0 TTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAA 1197 consensus_6976#1 TTGACATTCACTATTCAATTCCCAAGGAGAATCCGTCAGATAAAGATATGAACCAAGGAA 406 ************************************************************ consensus_6976#0 CCCTGGTGATCTTTAAT-TGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTG 1256 consensus_6976#1 CCCTGGTGATCTTTAATCTGGAACCAGCTGTTTCAAATGAGGAACTCCTTCAAATTTTTG 466 ***************** ****************************************** consensus_6976#0 GTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAGCGACACCATAGATTTA 1316 consensus_6976#1 GTGCATTTGGTGAAGTTAGGGAGATAAGAGAGACACCACATAAACGACACCATAGATTTA 526 ******************************************* **************** consensus_6976#0 TTGAGTTCTATGATGTTAGGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACA 1376 consensus_6976#1 TTGAGTTCTATGATGTTATGGCTGCAGAATCTGCCCTCCGTTCATTAAACAAGAGTGACA 586 ****************** ***************************************** consensus_6976#0 TTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTA 1436 consensus_6976#1 TTGCTGGAAAACGGGTAAAGTTGGAACCTAGCCGTCCTGGTGGAGCTCGCCGAAGTTTTA 646 ************************************************************ consensus_6976#0 TACAGCATTTTAATCACGAATTTGAGCAAGACGAAACAAAGCATAATTCATTTCAGATTG 1496 consensus_6976#1 TACAGCATTTTAATCACGAATTTGAGCAAGACGAAACACAGCATGATTCATTTCAGATTG 706 ************************************** ***** *************** consensus_6976#0 GTTCACCTTCTGCCAACTCTCCACCAAGTTTGTGGTCCCAACTTGGCAGCCCAACAGATG 1556 consensus_6976#1 GTGCACCTTCTGCCAACTCTCCAC------------------------------------ 730 ** ********************* consensus_6976#0 AAAATAAATTAAATGCACTCAATGAAACTGCATTTAATGGGGGAATGAGCCCTTTGGGCA 1616 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GTAACCATCTTTCTGGGTTCTCTTCAGGATATCCTCCCATGAAATCACCCGTTGGGAAGA 1676 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 GCTCCTATTGGAATAACCGTGCTGACAACATATTCCATGGGTCACCAACTTTGCACAATT 1736 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 CACATTCGTTTCCAGAACATCATGG 1761 consensus_6976#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||