|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1183 fasta sequence
[CGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATTTTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTTACATAGTAGTGTCGACGAAACCAACTTTCTAGAAATGCCACTGTACAAGCGTCTTTGCCCTAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAAAAAGGCCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCTTACACTAATATATAGGTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTGGAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTGTAGGGGTAAAATTGTCTTTTTTATAGTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACAAAGACGCTTCTATGATGGCATTTCCGGAAAGTTGGGTTCGTCAGTGTAAAAAATTAGAAGATAAAGAGAGTTGGTAGTGAAATATGAATAGTGTGAGAAGATTCATGAAAA]
[+] EMBL AK068539 [CGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATTTTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTTACATAGTAGTGTCGACGAAACCAACTTTCTAGAAATGCCACTGTACAAGCGTCTTTGCCCTAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAAAAAGGCCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCTTACACTAATATATAGGTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTGGAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTGTAGGGGTAAAATTGTCTTTTTTATAGTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACAAAGACGCTTCTATGATGGCATTTCCGGAAAGTTGGGTTCGTCAGTGTAAAAAATTAGAAGATAAAGAGAGTTGGTAGTGAAATATGAATAGTGTGAGAAGATTCATGAAAA]
[+] EMBL AK062334 [ GGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCGCACGGAAAAATCATTTTGACTGCACGGAAAAATCA ]
[+] EMBL OSS15479A [ CGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGNCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGNCGTCGCGTCCGCGAGGCCGNCTCCGTAGTCCGCTG ]
consensusID : consensus_6983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence
[AAAAAAAAAAAAAAAAAAAAAACGGCCCAATCCAGCCGCGCCTCTCCGTGGCCCAGAAGATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGGCCCCCGCCCTACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGAGACATTGCCGAGGTCGAAGGATATTGGTTCTCCCTTGCTTCTCGATCAAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTAGTTTACAAAAACTTGCAAGATTAGGATTAGCGATTGATTTATCTATCAAAGGGATGTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTTATAAGAGATGATAAGTCACCTGTACAAT]
[+] EMBL AK111368 [AAAAAAAAAAAAAAAAAAAAAACGGCCCAATCCAGCCGCGCCTCTCCGTGGCCCAGAAGATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGGCCCCCGCCCTACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGAGACATTGCCGAGGTCGAAGGATATTGGTTCTCCCTTGCTTCTCGATCAAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTAGTTTACAAAAACTTGCAAGATTAGGATTAGCGATTGATTTATCTATCAAAGGGATGTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTTATAAGAGATGATAAGTCACCTGTACAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6983#0 CGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCC 60
consensus_6983#1 AAAAAAAAAAAAAAAAAAAAAACGGCCCAATCCAGCCGCGCCTCTCCGTGGCC-CAGAAG 59
** * * * **** **** * *** * *
consensus_6983#0 TCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGT-GCCGTCGTCGCGTGCGTCGT 119
consensus_6983#1 ATGCTGCGCCGCCTACCGCTCCGCCTCG-CGCCGACGCTCGCCGGCGGCGGCGGCGGCGC 118
* * ** ***** ** ** * *** * **** ** ** *** **
consensus_6983#0 CAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACG 179
consensus_6983#1 CA--TCCCCCACC--GCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGG---- 170
** * * * * ***** * * *** * * ** * * **
consensus_6983#0 TCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCG 239
consensus_6983#1 CCCCCGCC-CTACCCGCTCTCCC-CGTCCGACCTCGAC-GCCGTCTCCGCGCTCCTCCCG 227
******* * * ** ** * * * ** ** * ** ** ***** *** * ***
consensus_6983#0 CTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCC 299
consensus_6983#1 CGCCTCGTCTCCGCGGGGAACGTCC-CCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCT 286
* * * ** ** ** * * * ** ** ** *** * ** * ***** *
consensus_6983#0 GCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCA-GCGGCCCAACAACGCCAC 358
consensus_6983#1 CCTCCCGGGCTCCACGGAGC--GCCTCCCGTTCTCCCCGCTCGCCGCGCACCT-CGCCTC 343
* *** *** * * *** **** ******** ** ** ** * **** *
consensus_6983#0 CTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGC-G 417
consensus_6983#1 CATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCG 403
* * ** * ** * **** ** **** * ** * * ** *** ** * *
consensus_6983#0 TGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTG 477
consensus_6983#1 CCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCC----TCT--CGCGCCG 457
* * * * * ** ** ** *** * ** ** ** ** * *
consensus_6983#0 CGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTGTTTCGTGCGG 537
consensus_6983#1 CCGCGCCCG--------CGAG---GCCGCCTCCGTCGTCCGCTGGCTCTGC--CGCCCGG 504
* *** *** ** * ** **** * * * ** ** ***
consensus_6983#0 GCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCC 597
consensus_6983#1 ACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGC-CGTCGCG-GGGCTCTGCCG 562
* * ** **** * * * ** ** * * * ***
consensus_6983#0 ATCCGCACACGAAAATATTGATTTTTCCAGACACTTGGGTGTAGACGGACAAATCATCCG 657
consensus_6983#1 GCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCG-----------TG 611
** ** * * * * ** * * ** * * ** *
consensus_6983#0 CACGGAAAAATCATTTTGACTGCACGGAAAAATCATTTTGACTGCACGGAAAAATGTTTT 717
consensus_6983#1 GACGGGATACGGACCTCGGCGAAGCTGCGGGA--GTCGGTGCGGGACGCGATGCTGCAGG 669
**** * * * * * * * * * * * * *** * **
consensus_6983#0 ACATAGTAGTGTCGACGAAACCAACTTTCTAGAAATGCCACTGTACAAGCGTCTTTGCCC 777
consensus_6983#1 ACGCG--AGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATG---AAGCAGCCGGACTC 724
** ** **** ** * ** ** * * ** **** * * *
consensus_6983#0 TAGAAATACTATCGTCGTTATGTTTCCGTTAGCACCCCTTCGTTAAGTGCTACAAAAAGG 837
consensus_6983#1 CGGCAA-GCTG--GCTGAGCTGGTCC----AGAAGCTTCTCGAAGAGTGGGAGGACTGAG 777
* ** ** * * ** * * ** * * *** **** * * *
consensus_6983#0 CCATTTTACCCCTACGAATTGCTAAAAAGTAAATTAAAACTTTTGCTCTTTTCATAAGCT 897
consensus_6983#1 ACATTGC-------CGAGGTCGAAGGATATTGGTTC--TCCCTTGCTTCTCGATCAAGGC 828
**** *** * * * * ** * ***** * ***
consensus_6983#0 TACACTAATATATAGGTTGTTCTTTACACTAAATTATTATAAATTATTATAGGTTGACTG 957
consensus_6983#1 ACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAG 888
** * * * * * *** ** * * * * ** * * ** *
consensus_6983#0 GAAGAGCAAAAGTTTAATGGGCTTTCAGCATTTTGTAGGGGTAAAATTGTCTTTTTTATA 1017
consensus_6983#1 AGAGTACAAAGCTT---CGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTA 945
** **** ** *** ** * * *** * * ** *** ** **
consensus_6983#0 GTACTTAACAGAGGGCTACTAACGAAAATCTAACGGTGATGATATTTTTGGAACAAAGAC 1077
consensus_6983#1 GT---TTACAAAAACTTGCAAGATTAGGATTAGCGAT--TGATTTATCTATCAAAGGGAT 1000
** * *** * * * * * ** ** * **** * * * * * **
consensus_6983#0 GCTTCTATGA--TGGCATTTCCGGAAAGTTGGGTTCGTCAGTGTAAAAAATTAGAAGATA 1135
consensus_6983#1 GTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTATCTATCAAAGAGATGGTTT 1060
* ** ** ** * *** * * * ** ** * ** *** * *
consensus_6983#0 AAGAGAGTTGGTAGTGAAATATGAATAGTGTGAGAAGATTCATGAAAA 1183
consensus_6983#1 ATAAGAGATGATAA-GTCACCTGTACAAT------------------- 1088
* **** ** ** * * ** * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||