These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 460 fasta sequence [GCGACGCGTGGGCGACGCGTACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCATGA-GGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGC-CAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA] [+] EMBL BI803412 [GCGACGCGTGGGCGACGCGTGGGCGA CAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCATGA GGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGC CAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATACTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA] [+] EMBL BI804166 [ ACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCATGAGGGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGCACAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAA ] [+] EMBL BI803895 [ ACGCGAGCAGGGTGTTGCTGAGA CGGCGGCGCAGGCCATGA GGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCGGCGGTGGCGC CAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGCTGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTCCGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTGCTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGTTTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGCTATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAA ] consensusID : consensus_6986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [CGCGACCAGGGTTTTCTGAGTAGCGCGGCCAGCCCATGAGGCCGCGAGCACCGGCGCCTGCGGTGCCAACCGGTGCCAGCGGCAGAACCATCGGCGGTGGCAGCCAGGCACGGCTCAGCGCACAGGCGAGCGGCTCTCCGGTGGCGTGGCTGACCGGCGGAGAAGCGCCGTGCGGAGAGGATGAGCGCGGCGCAGGGAGAAGTCCGAGAATGTGATCAGCTCGTGTACTGGGGACCCAGTTACCCCGATGCTTCTGTTGCTGCTGTAGTCTGTGACATCAGTTGACCAGAGTGACTAGTGTGATTTGCCCTTATGTTCGTTCCCTTTTGTAAGATGGTAAATCTGTGAAAATTTGCCGGTATTGTATTCTGCAAGATGCTACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA] [+] EMBL BI802949 [CGCGACCAGGGTTTTCTGAGTAGCGCGGCCAGCCCATGAGGCCGCGAGCACCGGCGCCTGCGGTGCCAACCGGTGCCAGCGGCAGAACCATCGGCGGTGGCAGCCAGGCACGGCTCAGCGCACAGGCGAGCGGCTCTCCGGTGGCGTGGCTGACCGGCGGAGAAGCGCCGTGCGGAGAGGATGAGCGCGGCGCAGGGAGAAGTCCGAGAATGTGATCAGCTCGTGTACTGGGGACCCAGTTACCCCGATGCTTCTGTTGCTGCTGTAGTCTGTGACATCAGTTGACCAGAGTGACTAGTGTGATTTGCCCTTATGTTCGTTCCCTTTTGTAAGATGGTAAATCTGTGAAAATTTGCCGGTATTGTATTCTGCAAGATGCTACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6986#0 GCGACGCGTGGGCGACGCGTACGCGAGCAGGGTGTTGCTGAGAGCGGCGGCGCAGGCCAT 60 consensus_6986#1 ---------------------CGCGACCAGGGT-TTTCTGAGTAGCGCGGC-CAGCCCAT 37 ***** ****** ** ***** ***** *** **** consensus_6986#0 GAGGCCGCGAGGCAGCCGGCGCCTGCGGTGGCCAAGCCGGTGCCAGCGGCGAAGCCATCG 120 consensus_6986#1 GAGGCCGCGAGC--ACCGGCGCCTGCGGTG--CCAACCGGTGCCAGCGGCAGAACCATCG 93 *********** *************** * * ************** * ****** consensus_6986#0 GCGGTGGC-GCCAGGCACGGCTCAGCGGCAGCAGGCGAGGCGGCTCTCCGGTGGCGTGGC 179 consensus_6986#1 GCGGTGGCAGCCAGGCACGGCTCAGCG--CACAGGCGAG-CGGCTCTCCGGTGGCGTGGC 150 ******** ****************** ******** ******************** consensus_6986#0 TGAGCCGGCGGAGAAGGCGGCCGTGGCGGAGAGGATGAGGCGGCGGCGCAGGGAGAAGTC 239 consensus_6986#1 TGA-CCGGCGGAGAAG--CGCCGTG-CGGAGAGGATGAG--CGCGGCGCAGGGAGAAGTC 204 *** ************ ****** ************* ****************** consensus_6986#0 CGAGAATGTGATGCAGCTCGTGTGCTGGGGACCCAGTTAGCCGCGATGCTTCTGTTGCTG 299 consensus_6986#1 CGAGAATGTGAT-CAGCTCGTGTACTGGGGACCCAGTTA-CCCCGATGCTTCTGTTGCTG 262 ************ ********** *************** ** ***************** consensus_6986#0 CTGTAGTGCTGTGACATCAGTTGAGCAGAGTGACTAGTGTGATTTGTGCCTTATGTTCGT 359 consensus_6986#1 CTGTAGT-CTGTGACATCAGTTGACCAGAGTGACTAGTGTGATTTGC-CCTTATGTTCGT 320 ******* **************** ********************* ************ consensus_6986#0 TTCCTTTTGTAAGATGGTAGAATCTGTGAAATTTTGACGGTATTGTATTCTGCAAGATGC 419 consensus_6986#1 TCCCTTTTGTAAGATGGTA-AATCTGTGAAAATTTGCCGGTATTGTATTCTGCAAGATGC 379 * ***************** *********** **** *********************** consensus_6986#0 TATGAAATAGTGAAGTACTGTTCCTTTTCTGAAAAAAAAAA 460 consensus_6986#1 TACCCACTAGTGAAGTCCGGTCCCTTTTCGGAAAAA----- 415 ** * ********* * ** ******* ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||