These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGCTTCCATTCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAAACATTAACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAATTTGGAAAACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGGGGATACCA] [+] EMBL CF335959 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGCTTCCATTCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAAACATTAACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAATTTGGAAAACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGGGGATACCA] consensusID : consensus_699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGCTTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAAACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAATTTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG] [+] EMBL CF307796 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGCTTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAAACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAATTTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_699#0 ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGC 54 consensus_699#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGC 60 *************************************************** ** consensus_699#0 TTCCATTCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCT 114 consensus_699#1 TTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCT 120 **** ***************** ************************************* consensus_699#0 GAAAGGGCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAA 174 consensus_699#1 GAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAA 180 *********** ******* ******** ******** **************** ***** consensus_699#0 ACATTAACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAAT 234 consensus_699#1 ACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAAT 240 ********************** ***** * *** ***** ****************** consensus_699#0 TTGGAAAACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGG 294 consensus_699#1 TTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG----------------- 283 **** * *************** **** ******* ****** consensus_699#0 GGATACCA 302 consensus_699#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||