cluster # 7

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Oryza sativa
cluster # 7 cluster # 7 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7#0 length = 754 sequences # 1

consensus_7#1 length = 493 sequences # 1

consensusID : consensus_7#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence

                              [CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGGACGCGGAGACGATCGGAATCCTCACCAGCGCCGCCAACCAGAAAGGGGTGGAGGTGGTGGCGAAGGTGTACTGGGGCGAGCCGGCGAAGAAGCTGACGGAGGCGGCGCAGGGGATTCCCCTGCACTGGCTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATGGGGAGCGTGAGCACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAGAACCTGCCGCCTCCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT]

[+] EMBL AK063611             [CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGGACGCGGAGACGATCGGAATCCTCACCAGCGCCGCCAACCAGAAAGGGGTGGAGGTGGTGGCGAAGGTGTACTGGGGCGAGCCGGCGAAGAAGCTGACGGAGGCGGCGCAGGGGATTCCCCTGCACTGGCTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATGGGGAGCGTGAGCACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAGAACCTGCCGCCTCCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT]




>consensus_7#0
CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGA
GATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGC
GGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGG
GCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCG
TTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCG
CTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGGACGCGGAG
ACGATCGGAATCCTCACCAGCGCCGCCAACCAGAAAGGGGTGGAGGTGGTGGCGAAGGTG
TACTGGGGCGAGCCGGCGAAGAAGCTGACGGAGGCGGCGCAGGGGATTCCCCTGCACTGG
CTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATGGGGAGCGTGAGC
ACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAGAACCTGCCGCCT
CCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGG
CTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTG
ACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT

consensusID : consensus_7#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT]

[+] EMBL AK063609             [CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTTGTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGGGCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT]




>consensus_7#1
CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTT
GTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGG
GCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGC
TGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCA
AGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGA
TGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCA
CCGCAGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGATTTCCCC
ACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACTGTCT
CTGCTTGACTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7#0      --------CCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTT 52
consensus_7#1      CAACGACACCTGCAGGCTAGCTAGCTAACAACCAGCTGAGAGGTTAATTAATTATGATTT 60
                           ****************************************************

consensus_7#0      GTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGG 112
consensus_7#1      GTATGAGAGATCGATCGAGAAGAGGAGTAGCGAGGGAGAGGATGGCGGCGGTGAGCGTGG 120
                   ************************************************************

consensus_7#0      GCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGC 172
consensus_7#1      GCGGCGGCGGGAGGAACATCGGGGTGGCGATGGACTTCTCGGCGTGCAGCAAGGCGGCGC 180
                   ************************************************************

consensus_7#0      TGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCA 232
consensus_7#1      TGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTCCACGTCA 240
                   ************************************************************

consensus_7#0      AGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGA 292
consensus_7#1      AGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGA 300
                   ************************************************************

consensus_7#0      TGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGTCGCGCCGG 352
consensus_7#1      TGATCCCGCTGGTGGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCA 360
                   *************************************************** ***  *  

consensus_7#0      ACGCGGAGACGATCGGAATCCTCACCAGC-GCCGCCAACCAGAAAGGGGTGGAGGTGGTG 411
consensus_7#1      CCGC--AGCCCGTCGCAACGGCGGCGAGCTACTACTGATGGCTGATCAGCTGCGAT--TT 416
                    ***  ** *  *** **      * ***  *  *  *      *   *  * * *  * 

consensus_7#0      GCGAAGGTGTACTGGGGCGAGCCGGCGAAGAAGCTGACG---GAGGCGGCGCAGGGGATT 468
consensus_7#1      CCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGGACT 476
                    *  * ** *     **  *** *   *    * **  *   **   ** *   **** *

consensus_7#0      CCCCTGCACTGGCTCGTCGTCGGGAACAGAGGCCTCGGCGCCGTCAAGAGGGTTCTGATG 528
consensus_7#1      GTCTCTGCTTGACTGCT------------------------------------------- 493
                     *      ** **  *                                           

consensus_7#0      GGGAGCGTGAGCACGTACGTCGCCAACCACGCCACCTGCCCCGTCACCGTCGTCAGGGAG 588
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      AACCTGCCGCCTCCGCCGCCGCCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGC 648
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      TACTACTGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTC 708
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      GGTTGCTGTGTGACTGGGAGTCTGGGACTGTCTCTGCTTGACTGCT 754
consensus_7#1      ----------------------------------------------