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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 700 cluster # 700       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_700#0 length = 301 sequences # 1  
consensus_700#1 length = 286 sequences # 1  

consensusID : consensus_700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCAA]

[+] EMBL CF333376             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCAA]


>consensus_700#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGG TGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAA AAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGG AAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTT GGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCA A



consensusID : consensus_700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAACTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCCTTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCCCAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT]

[+] EMBL CF291962             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAACTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCCTTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCCCAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT]


>consensus_700#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAA TGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAA CTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCC TTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCC CAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_700#0      --------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAA 52
consensus_700#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAA 60
                             ********************************************   *****

consensus_700#0      TGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAA 112
consensus_700#1      TGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAA 120
                     *********** ******* ************* ** ** *** ** ***** **** **

consensus_700#0      CTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACA 172
consensus_700#1      CTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCC 180
                     ** *** *************** ***** ***** ************** ******* * 

consensus_700#0      TTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCC 232
consensus_700#1      TTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCC 240
                     ************ ************ ************ ***** ***************

consensus_700#0      CAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACC 292
consensus_700#1      CAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT-------------- 286
                     *********************** **********************              

consensus_700#0      ATGTCCCAA 301
consensus_700#1      ---------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)