cluster # 700

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Oryza sativa
cluster # 700 cluster # 700 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_700#0 length = 301 sequences # 1

consensus_700#1 length = 286 sequences # 1

consensusID : consensus_700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCAA]

[+] EMBL CF333376             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCAA]




>consensus_700#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGG
TGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAA
AAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGG
AAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTT
GGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCA
A

consensusID : consensus_700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAACTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCCTTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCCCAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT]

[+] EMBL CF291962             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAACTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCCTTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCCCAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT]




>consensus_700#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAA
TGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAA
CTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCC
TTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCC
CAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_700#0      --------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAA 52
consensus_700#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAA 60
                             ********************************************   *****

consensus_700#0      TGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAA 112
consensus_700#1      TGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAA 120
                     *********** ******* ************* ** ** *** ** ***** **** **

consensus_700#0      CTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACA 172
consensus_700#1      CTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCC 180
                     ** *** *************** ***** ***** ************** ******* * 

consensus_700#0      TTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCC 232
consensus_700#1      TTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCC 240
                     ************ ************ ************ ***** ***************

consensus_700#0      CAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACC 292
consensus_700#1      CAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT-------------- 286
                     *********************** **********************              

consensus_700#0      ATGTCCCAA 301
consensus_700#1      ---------