These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCAA] [+] EMBL CF333376 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAATGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAACTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACATTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCCCAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACCATGTCCCAA] consensusID : consensus_700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAACTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCCTTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCCCAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT] [+] EMBL CF291962 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAATGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAACTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCCTTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCCCAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_700#0 --------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCAGTAAAAA 52 consensus_700#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCAAAAAAA 60 ******************************************** ***** consensus_700#0 TGGGCGGGTGTACTTTGACATAACATATGTTTCGCCATTACAAGCCGCTTTGCAGTTCAA 112 consensus_700#1 TGGGCGGGTGTTCTTTGACCTAACATATGTTTCCCCCTTTCAAACCCCTTTGGAGTTTAA 120 *********** ******* ************* ** ** *** ** ***** **** ** consensus_700#0 CTACTTAAAAATAAAAGGCCCTAATGACAGGCCTCACTCAAAAATAAACTCAAACTAACA 172 consensus_700#1 CTTCTTTAAAATAAAAGGCCCTTATGACCGGCCTTACTCAAAAATAAACCCAAACTACCC 180 ** *** *************** ***** ***** ************** ******* * consensus_700#0 TTTTTGGGAAGGATAATAAAAAGGGATGAAAAATGCTTTCAAAACAACCAATCCCAATCC 232 consensus_700#1 TTTTTGGGAAGGGTAATAAAAAGGGGTGAAAAATGCTTCCAAAAAAACCAATCCCAATCC 240 ************ ************ ************ ***** *************** consensus_700#0 CAATTTTTGGATAAATAACAACATCCCCTTTTGATATTTTAAAACTTGGTGAACCCAACC 292 consensus_700#1 CAATTTTTGGATAAATAACAACACCCCCTTTTGATATTTTAAAACT-------------- 286 *********************** ********************** consensus_700#0 ATGTCCCAA 301 consensus_700#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||