These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1962 fasta sequence [CCACCGGCAGTTACGCCTCCGCGCTCCTCCTTCCCAAGAGACGCAGATCTCCACCCCGCGCTCGCCTCGCTTCCCCCAAAAAGTCTTCTCGTGAGAGCTTTCCCCCCCCTCCTCCACCCAACAAATCCCCAGCCTCCCAGATTCGTGGCGGAGGCTGCGGCCTGCGGCTGTTCTAGGGTTAGCTCTCGCTCCGCCGGCATTTCTCGGTAGATAAAGTATTGTAAGGGCTTGGGTTTGCAACCGGAGATGGATGCTAAAAAGAAGAGGAACAAGAAGAAGAAGGGGAACCAAGGGAAGAACACTGGTGATGTAACGTCCAGCACTGCAGAGGCTGCCATTCGGTCCCACAATCATGAGACAGCCCCTAATGACCATCATAATGGCACTGATGCTGATGATGCAATGTCCACTGTTGGAGAGGAAGCTCCTCAGTACCAGAATCATGAGCCAGATCGACAGGCAAATCATGATAGCACAAACACTGATGATGTCATGTCCTCTGTTGGAGAGGGGATTCCATTTCAGAACCTTGACCCTGCCATGACACATGAAAATCACAAAGTCAGTAGTACAGCCCATGCTGATCAGAGGAGTGTTGAGATGTCAGATTCCACCGTGGAGCTTGACATGCACAGACTATATGAAGCAAAGCTTGATAAATTACATGATACGATAAAGAAGTTGGAAGATGAGAAGAGTTTGTGGCATCAAAAAATGAGCTCCATGGAGATTGAGGTTGAAAAGTTGCATAACAAAGTGGATTATCATGCACAGAATGAGGTCCGTTTGGAGGAAAAGCTCAATAATTTACAGAATGGGTATGATGTGCTGATTAAGAAGGAGGTAGCTTTGGATAACAAAGTCAGGTCCATAGAGGTCATCAATGATGCCTTAACTCATCAGGAGACGTCTCTTAAAGAGAGATTAAGTGGACTGGAGGAGACAAATAAAGTACTGCTTGTACAGGTGAAGGTGCTGGAGGAAGCTTCAAACAATACTGTTGAGGAAAGCCAGAGGTTGGTAAAAGGTTTTGATGAACTGGCATCAAGATTAGGAGTCTTTGAAGCAAAGTCTGCTCTTACTGAAGCCTCCGTGACTAAAAAGGGTAATGAACTGATTGTTGATAGAAGTGTAAACAGTTCTGCAGCAATTACTTCTGTGGATAACTATAGTCCAATCAACAGCAGTCCTAGCAACGCCTATGTTAATAATCATCTAGAAGAAGCTCCAATGCAACTTCCAGAAACAACAATCAATGATGTTTCTTCCGAGGGCCTCATTGACATGAATGCACATCAAAGGTCAAAGCAAGATTTTGATGAACCAAGAACAAGCGAAGAAATTCTGCCAGTTGCATTAGATGATATACAGATTCATGAGGAAGACCCATAACCACCGGTAGCCGATGATGAGGCAGAGGAGGTTCCATTTTCTGATGCTCCAATCGTCGGTGCTCCATTCCGGTTGATTTCATTCGTTGCTAGGTATGTCAGTGGTGCTGATTTGGTGAACCAGAAGTAATTCTCCATTAATGCCATCAAGCAGCTTGAGATCTGTATTTCTTGGAAAGAGGAGTCTTCCTGTTTTGATTCTGCTCACACAGTTATCTCGCTAAGATTGTGAGGATGTATACGATGGATGCACTGAATTCAACAGAGATATGGAACCTCTGTTCAGTTCTTGGTAGTGTGCTCGTGTCACTACCAGTTTTTCTTCCTCCCCTGTCAATTTTTCAGGGGCAGCAGAAGCTCTTGTTCCCCAGTTATAGTGTTATACACACAAGAGGCCTTCCTGACCATGTGGGGTGTACTGACCATATTTATTCTACAGAAACTGAAAATTTTTGGTATTCCAACAGATGTTTAATGCACTGAACAATGACCATGCATCTTGAAGAAAGTTGACCATTTGGATTTGATGTATTGCATTGATTGGATGGTTGCTAAAAAATGTTGTTTTGTC] [+] EMBL AK109811 [CCACCGGCAGTTACGCCTCCGCGCTCCTCCTTCCCAAGAGACGCAGATCTCCACCCCGCGCTCGCCTCGCTTCCCCCAAAAAGTCTTCTCGTGAGAGCTTTCCCCCCCCTCCTCCACCCAACAAATCCCCAGCCTCCCAGATTCGTGGCGGAGGCTGCGGCCTGCGGCTGTTCTAGGGTTAGCTCTCGCTCCGCCGGCATTTCTCGGTAGATAAAGTATTGTAAGGGCTTGGGTTTGCAACCGGAGATGGATGCTAAAAAGAAGAGGAACAAGAAGAAGAAGGGGAACCAAGGGAAGAACACTGGTGATGTAACGTCCAGCACTGCAGAGGCTGCCATTCGGTCCCACAATCATGAGACAGCCCCTAATGACCATCATAATGGCACTGATGCTGATGATGCAATGTCCACTGTTGGAGAGGAAGCTCCTCAGTACCAGAATCATGAGCCAGATCGACAGGCAAATCATGATAGCACAAACACTGATGATGTCATGTCCTCTGTTGGAGAGGGGATTCCATTTCAGAACCTTGACCCTGCCATGACACATGAAAATCACAAAGTCAGTAGTACAGCCCATGCTGATCAGAGGAGTGTTGAGATGTCAGATTCCACCGTGGAGCTTGACATGCACAGACTATATGAAGCAAAGCTTGATAAATTACATGATACGATAAAGAAGTTGGAAGATGAGAAGAGTTTGTGGCATCAAAAAATGAGCTCCATGGAGATTGAGGTTGAAAAGTTGCATAACAAAGTGGATTATCATGCACAGAATGAGGTCCGTTTGGAGGAAAAGCTCAATAATTTACAGAATGGGTATGATGTGCTGATTAAGAAGGAGGTAGCTTTGGATAACAAAGTCAGGTCCATAGAGGTCATCAATGATGCCTTAACTCATCAGGAGACGTCTCTTAAAGAGAGATTAAGTGGACTGGAGGAGACAAATAAAGTACTGCTTGTACAGGTGAAGGTGCTGGAGGAAGCTTCAAACAATACTGTTGAGGAAAGCCAGAGGTTGGTAAAAGGTTTTGATGAACTGGCATCAAGATTAGGAGTCTTTGAAGCAAAGTCTGCTCTTACTGAAGCCTCCGTGACTAAAAAGGGTAATGAACTGATTGTTGATAGAAGTGTAAACAGTTCTGCAGCAATTACTTCTGTGGATAACTATAGTCCAATCAACAGCAGTCCTAGCAACGCCTATGTTAATAATCATCTAGAAGAAGCTCCAATGCAACTTCCAGAAACAACAATCAATGATGTTTCTTCCGAGGGCCTCATTGACATGAATGCACATCAAAGGTCAAAGCAAGATTTTGATGAACCAAGAACAAGCGAAGAAATTCTGCCAGTTGCATTAGATGATATACAGATTCATGAGGAAGACCCATAACCACCGGTAGCCGATGATGAGGCAGAGGAGGTTCCATTTTCTGATGCTCCAATCGTCGGTGCTCCATTCCGGTTGATTTCATTCGTTGCTAGGTATGTCAGTGGTGCTGATTTGGTGAACCAGAAGTAATTCTCCATTAATGCCATCAAGCAGCTTGAGATCTGTATTTCTTGGAAAGAGGAGTCTTCCTGTTTTGATTCTGCTCACACAGTTATCTCGCTAAGATTGTGAGGATGTATACGATGGATGCACTGAATTCAACAGAGATATGGAACCTCTGTTCAGTTCTTGGTAGTGTGCTCGTGTCACTACCAGTTTTTCTTCCTCCCCTGTCAATTTTTCAGGGGCAGCAGAAGCTCTTGTTCCCCAGTTATAGTGTTATACACACAAGAGGCCTTCCTGACCATGTGGGGTGTACTGACCATATTTATTCTACAGAAACTGAAAATTT ] [+] EMBL CB637520 [ ACCCCGCGCTCGCCTCGCTTCCCCC AAAAGTCTTCTCGTGAGAGCTTTCCCCCCCCTCCTCCACCCAACAAATCCCCAGCCTCCCAGATTCGTGGCGGAGGCTGCGGCCTGCGGCTGTTCTAGGGTTAGCTCTCGCTCCGCCGGCATTTCTCGGTAGATAAAGTATTGTAAGGGCTTGGGTTTGCAACCGGAGATGGATGCTAAAAAGAAGAGGAACAAGAAGAAGAAGGGGAACCAAGGGAAGAACACTGGTGATGTAACGTCCAGCACTGCAGAGGCTGCCATTCGGTCCCACAATCATGAGACAGCCCCTAATGACCATCATAATGGCACTGATGCTGATGATGCAATGTCCACTGTTGGAGAGGAAGCTCCTCAGTACCAGAATCATGAGCCAGATCGACAGGCAAATCATGATAGCACAAACACTGATGATGTCATGTCCTCTGTTGGAGAGGGGATTCCATTTCANAACCTTGACCCTGCCATGACACATGAAAATCACAAAGTCAGTAGTACAGCC ] [+] EMBL CF304870 [ TAAAGTATTGTAAGGGCTTGGGTTTGCAACCGGAGATGGATGCTAAAAAGAAGAGGAACAAGAAGAAGAAGGGGAACCAAGGGAAGAACACTGGTGATGTAACGTCCAGCACTGCAGAGGCTGCCATTCGGTCCCACAATCATGAGACAGCCCCTAATGACCATCATAATGGCACTGATGCTGATGATGCAATGTCCACTGTTGGAGAGGAAGCTCCTCAGTACCAGAATCATGAGCCAGATCGACAGGCAAATCATGATAGCACAAACACTGATGATGTCATGTCCTCTGTTGGAGAGGGGATTCCATTTCAGAACCTTGACCCTGCCATGACACATGAAAATCACAAAGTCAGTAGTACAGCCCATGCTGATCAGAGGAGTGTTGAGATGTCAGATTCCACCGTGGAGCTTGACATGCACAGACTATATGAAGCAAAGCTTGATAAATTACATGATACGATAAAGAAGTTGGAAGATGAGAAGAGTTTGTGGCATCAAAAAATG ] [-] EMBL CB637521 [ AGATGATATACAGATTCATGAGGAAGACCCACAACCACCGGTAGCCGATGATGAGGCAGAGGAGGTTCCATTTTCTGATGCTCCAATCGTCGGTGCTCCATTCCGGTTGATTTCATTCGTTGCTAGGTATGTCAGTGGTGCTGATTTGGTGAACCAGAAGTAATTCTCCATTAATGCCATCAAGCAGCTTGAGATCTGTATTTCTTGGAAAGAGGAGTCTTCCTGTTTTGATTCTGCTCACACAGTTATCTCGCTAAGATTGTGAGGATGTATACGATGGATGCACTGAATTCAACAGAGATATGGAACCTCTGTTCAGTTCTTGGTAGTGTGCTCGTGTCACTACCAGTTTTTCTTCCTCCCCTGTCAATTTTTCAGGGGCAGCAGAAGCTCTTGTTCCCCAGTTATAGTGTTATACACACAAGAGGCCTTCCTGACCATGTGGGGTGTACTGACCATATTTATTCTACAGAAACTGAAAATTTTTGGTATTCCAACAGATGTTTAATGCACTGAACAATGACCATGCATCTTGAAGAAAGTTGACCATTTGGATTTGATGTATTGCATTGATTGGATGGTTGCTAAAAAATGTTGTTTTGTC] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||