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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1256 fasta sequence
[TCAACAAAACGGTGTTGTTGAAAGGAAAAATCGTGTTTTGGTTGAGATGGCTAGAACGATGTTGGATGAATATAAAACTCCTAGAAAATTTTGGGCTGAGGCTATTAACACTGCTTGTTATATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATTTGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAAATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCCCGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTGTGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTCACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAACGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCA-GGCCGGTCAGACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATACAGAACGTGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCAACGACGACATCCACCGGAACAAATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCA]
[+] EMBL AK064639 [TCAACAAAACGGTGTTGTTGAAAGGAAAAATCGTGTTTTGGTTGAGATGGCTAGAACGATGTTGGATGAATATAAAACTCCTAGAAAATTTTGGGCTGAGGCTATTAACACTGCTTGTTATATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATTTGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAAATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCCCGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTGTGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTCACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAACGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCA GGCCGGTCAGACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATACAGAACGTGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCAACGACGACATCCACCGGAACAAATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCA]
[+] EMBL CB637697 [ TTGTTATATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATTTGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAAATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCCCGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTGTGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTCACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAACGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCAGGGCCGGTCANACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTG ]
[-] EMBL CB642319 [ CAGACCGGGCGCCA GTCCGGTCAGACCGCCGGCACACCTCCGGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGTTGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATCCAGAACGTGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCACCGACGACATCCACCGGAACAAATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTCCTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTGTAaaaaaaaag ]
consensusID : consensus_7003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[ATAATCAACTGTTCGTTCAGATTTATGTGGATGATATCATCTTTGGTTGTTTGACTCACGCTTTGGTTGTAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCTTTTCTTGGTACATC]
[-] EMBL CB637698 [ATAATCAACTGTTCGTTCAGATTTATGTGGATGATATCATCTTTGGTTGTTTGACTCACGCTTTGGTTGTAGATTTTGCTGAGACTATGCGCAGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAAGCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCAGATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCTTTTCTTGGTACATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7003#0 TCAACAAAACGGTGTTGTTGAAAGGAAAAATCGTGTTTTGGTTGAGATGGCTAGAACGAT 60
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 GTTGGATGAATATAAAACTCCTAGAAAATTTTGGGCTGAGGCTATTAACACTGCTTGTTA 120
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 TATTTCAAATCGGGTTTTCTTGAGATCTAAACTTGGAAAAACTTCTTATGAACTTCGATT 180
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 TGGTCATCAACCCAAAGTTTCACATTTGCGTGTTTTTGGTTGCAAGTGCTTTGTCTTGAA 240
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 ATCTAGAAATTTGGATAAGTTTGAGGCACGTTCTACCGATGGATTGTTTCTTGGTTACCC 300
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 CGCACATACTCGTGACTATCGTGTACTTATTTTGGGGACTAACAAAATCGTGGAGACTTG 360
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 TGAAGTTTCTTTTGATGAGGCTAGTCCCGGTACTAGACATGAAATCGCAGGTACACTGTC 420
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 ACAGGTTCAGGAGGAGGATGGTCGTATTTTTGAAGACGAGAGCGACTACGACGACGACAA 480
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 CGAGGTCGGCTCGGCCGGTCAGACCGGGCGCCAGGCCGGTCAGACCGCCGGCACACCTCC 540
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 GGTCAAACCGGCGCATGACGTGCGGTCAGACCGGCCAGGGTCGTCGGCTGAGGGATCTGT 600
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 TGATGCTGATCGAGATGGTCCTCCGGAGATTACAACTTCGACCAGTACGGATACAGAACG 660
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 TGGATCAACTTCAGAAGTTGCTGCTCCTTTGCACATTCAACGACGACATCCACCGGAACA 720
consensus_7003#1 ------------ATAATCAACTGTTCGTTCAGATTTATGTGGATGATATC---------- 38
* ** *** ** ** * * ** ** ***
consensus_7003#0 AATTATTGGTAATATAGGTGAGCGGACTACAAGGTCTAAGATTTTGCTGAGACTATGCGC 780
consensus_7003#1 -ATCTTTGGTTGTTTGACT---CACGCTTT--GGTTGTAGATTTTGCTGAGACTATGCGC 92
** ***** * * * * ** *** **********************
consensus_7003#0 AGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAG 840
consensus_7003#1 AGGGAATTTGAGATGAGCATGATGGATGAGTTATCGTACTTTTTGGGATTGCAAATTAAG 152
************************************************************
consensus_7003#0 CAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGG 900
consensus_7003#1 CAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTATACGAATGATCTTTTGAGACGG 212
************************************************************
consensus_7003#0 TTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGAT 960
consensus_7003#1 TTCAAGATGGAGAATTGCAAGCAAATTTCTACACCTATTGGTTCTACAGCTGTGTTGGAT 272
************************************************************
consensus_7003#0 CCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTG 1020
consensus_7003#1 CCTGATGAAGATGAAGCTGTTGATCAAAAGGAGTATAGAAGTATGATTGGATCTTTGTTG 332
************************************************************
consensus_7003#0 TATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAA 1080
consensus_7003#1 TATCTAACTGCTTCTAGGCCAGACATAGAATTTGCTGTGTGTTTGTGTGCGTGCTTTCAA 392
************************************************************
consensus_7003#0 GCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCAT 1140
consensus_7003#1 GCTTCTCCTCGTGCTTCACATAGTCAAGCGGTCAACCGAATAATGAGGTATTTGAATCAT 452
************************************************************
consensus_7003#0 ACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCA 1200
consensus_7003#1 ACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTAAGTGGATATTCA 512
************************************************************
consensus_7003#0 GATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCA---- 1256
consensus_7003#1 GATGCTGATTTTGGAGGTTGTTGAATTGATAGGAAAAGTACTAGTGGAACATGTCTTTTC 572
*******************************************************
consensus_7003#0 ----------
consensus_7003#1 TTGGTACATC 582
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||