cluster # 7007

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Oryza sativa
cluster # 7007 cluster # 7007 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7007#0 length = 1110 sequences # 3

consensus_7007#1 length = 251 sequences # 1

consensusID : consensus_7007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1110
fasta sequence

                              [CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCGCCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCCGCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCCGTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGCGCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACTGCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTCTTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCTTCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAGGTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGATAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGCACTTCGATTCTTCAGTCGACACAAAAAAAA]

[+] EMBL AK102840             [CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCGCCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCCGCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCCGTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGCGCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACTGCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTCTTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCTTCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAGGTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTT                                                                                                     ]
[+] EMBL AU083423             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TAAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGATTCGTAACCTGTTTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGATAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGCACTTCGATTCTTCAGTCGACACAAAAAAAA]
[+] EMBL AU068009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGAGCAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGANGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATTNATAGCCGTAGTTTCTGATCNTTGTCAGTGTAGTTTGCTGGTG TGCGCTGCATGTTTCCATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGATAAACCTGGGATGTTTCTGATGTGAAaaaaa                                                           ]




>consensus_7007#0
CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGC
GGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCG
CCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCC
GCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCC
GTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGC
GCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACT
GCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTC
TTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCT
TCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAG
GTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGG
TGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAG
GTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAG
CAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTC
ATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATT
GATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCC
ATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTT
GCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGA
TAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGC
ACTTCGATTCTTCAGTCGACACAAAAAAAA

consensusID : consensus_7007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCATGGCCGCCGGCTCCGGCGCCCTCCGCCGCCGCACGNCGNCTCTTCGNCGGTGGCCGCTCCTGCGTACTCGTCCNTGGCCCTGCGCCAAGGCGGTGGCGCGCTCCACCCTNCACGTCGCACGGCGGGCGCCGCTCCGTCGATCCAGGCGCCTCNTTGTCCGCGTATTCTCCGCGGGAGGATACGC]

[+] EMBL C74083               [TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGGCGACGCATGGCCGCCGGCTCCGGCGCCCTCCGCCGCCGCACGNCGNCTCTTCGNCGGTGGCCGCTCCTGCGTACTCGTCCNTGGCCCTGCGCCAAGGCGGTGGCGCGCTCCACCCTNCACGTCGCACGGCGGGCGCCGCTCCGTCGATCCAGGCGCCTCNTTGTCCGCGTATTCTCCGCGGGAGGATACGC]




>consensus_7007#1
TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGCGG
CGACGCATGGCCGCCGGCTCCGGCGCCCTCCGCCGCCGCACGNCGNCTCTTCGNCGGTGG
CCGCTCCTGCGTACTCGTCCNTGGCCCTGCGCCAAGGCGGTGGCGCGCTCCACCCTNCAC
GTCGCACGGCGGGCGCCGCTCCGTCGATCCAGGCGCCTCNTTGTCCGCGTATTCTCCGCG
GGAGGATACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7007#0      CCTTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGC 60
consensus_7007#1      --TTCGTACGCTTCACCGGAGTGGGTGGAGACGAGACGCGAGCAAACCCAAAACCCTCGC 58
                        **********************************************************

consensus_7007#0      GGCGACGCCATGGCCGCCGCGCTCCGCGCCGCCCTCCGCCGCCGCCACGCCGCCTCTTCG 120
consensus_7007#1      GGCGACGC-ATGGCCGCCG-GCTCCG--GCGCCCTCCGCCGCCGC-ACGNCGNCTCTTCG 113
                      ******** ********** ******   **************** *** ** *******

consensus_7007#0      CCGGTGGCCCGCCTCCTGCCGTACTCGTCCCCTGGACCCTGCGCCAAGGGCGGTGGCGCC 180
consensus_7007#1      NCGGTGGCC--GCTCCTGC-GTACTCGTCCNT--GGCCCTGCGCCAAGG-CGGTGGCGCG 167
                       ********   ******* **********    * ************* ********* 

consensus_7007#0      GCCTCCACCCTCCACGCCGCCACGCGCGGCGCGCCCGCTCCGTCGATCCAGGCGCCCTCC 240
consensus_7007#1      --CTCCACCCTNCACGTCGC-ACGGCGGGCGC---CGCTCCGTCGATCCAGGCGCCT--C 219
                        ********* **** *** ***   *****   *********************   *

consensus_7007#0      GTTGTCCGCCGCTACTGCTCCGCCGGGGGAGGATACGCCGCCGTGCGCCCTGCTCGCGGC 300
consensus_7007#1      NTTGTCCGCG--TATT-CTCCGC---GGGAGGATACGC---------------------- 251
                       ********   ** * ******   ************                      

consensus_7007#0      GCCTCCCCGCTCCAGGTACCCTCTCTGGTACGCCGCTACGGCTCCACCACGGGAGCCACT 360
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      GCTACCGCCACCCCTGCCGCTGGCGTCCCTGCCCTTCACCGTGCATCTCCACTTCCCCTC 420
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      TTTGTGCCCCGCCGCCGCCGTGTGTATTCTTCTGAGGAGTATTCTTCTGATGAGTATTCT 480
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      TCTGATGGGTATTCTTCTGGTCAGGAATACAAGTATGTGGAGGATTGCCAAGTGGCTAAG 540
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      GTTATGGATCATCAACTCAGAAGGATTGAGAAAGTTGAGGCTGGACTAAAGCAGCTCGGG 600
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      TGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAG 660
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      GTTTCCCGTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAG 720
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      CAAGGTCCCTGCTGATTGTTCCATTGATGATTAAGAAGAAGACGATCTCGCTTGATGCTC 780
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      ATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACTTCATCTACTGATT 840
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      GATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCC 900
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      ATTTTGATTCGTAACCTGATTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTT 960
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      GCTTGATGCGTGGGCGCGTTAACTTTGGTATCCAGCTCTGCTGTACTTTCTTATGCATGA 1020
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      TAAACCTGGGATGTTTCTGATGTGAACTGGAAATGGACTATCATGGCATTCATGTAGTGC 1080
consensus_7007#1      ------------------------------------------------------------
                                                                                  

consensus_7007#0      ACTTCGATTCTTCAGTCGACACAAAAAAAA 1110
consensus_7007#1      ------------------------------