cluster # 7009

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7009 cluster # 7009 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7009#0 length = 843 sequences # 2

consensus_7009#1 length = 572 sequences # 1
consensus_7009#2 length = 280 sequences # 1

consensusID : consensus_7009#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 843
fasta sequence

                              [AAACGTGGGAAGAGACTGGTATTAAGTTGGGGAAGTNATTTATCACAGTTCTCAACCGTGGCCTGTTGGGCCGAGTACTATGCCATGCCAACTGATGGTGGGATTCTTTGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGATGCCCAATGGCACAGCCGCGAGGATGTCAAGAAAGCACTAACATTTGCAGAATATGAGAAAGCTCAGAGAACAAATGCGCTCAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAAAATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCACCTCATATCATCATGGGTTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCTATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAATAAAAAATTTTAGTCCCATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAATATGTCCATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGCTTGTATCTTNCATATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGGTTGGTACAAGTTGANGACAATCTGNTACATGNTGACTGGTATAGGTCTGCTTGGAGAAAGGCTGGAATATTCAAGTTAATTTTCCCCATGAGTCTTAAAAGAA]

[+] EMBL CA767555             [AAACGTGGGAAGAGACTGGTATTAAGTTGGGGAAGTNATTTATCACAGTTCTCAACCGTGGCCTGTTGGGCCGAGTACTATGCCATGCCAACTGATGGTGGGATTCTTTGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGATGCCCAATGGCACAGCCGCGAGGATGTCAAGAAAGCACTAACATTTGCAGAATATGAGAAAGCTCAGAGAACAAATGCGCTCAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAAAATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCACCTCATATCATCATGGGTTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCTATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAATAAAAAATTTTAGTCCCATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAATATGTCCATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGCTTGTATCTTNCATATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGGTTGGTACAAGTTGANGACAATCTGNTACATGNTGACTGGTATAG                                                           ]
[-] EMBL CB618109             [                                                                                         AACTGATGGTGGGATTCTTTGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGATGCCCAATGGCACAGCCGCGAGGATGTCAAGAAAGCACTAACATTTGCAGAATATGAGAAAGCTCAGAGAACAAATGCGCTCAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAAAATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCACCTCATATCATCATGGGTTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCTATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAATAAAAAATTTTAGTCCCATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAATATGTCCATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTATCTTCCATATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGTTTGTTACAAGTTGAGGACAATCTGTTACATGTTGACTGGTATAGGTCTGCTTGGAGAAAGGCTGGAATATTCAAGTTAATTTTCCCCATGAGTCTTAAAAGAA]




>consensus_7009#0
AAACGTGGGAAGAGACTGGTATTAAGTTGGGGAAGTNATTTATCACAGTTCTCAACCGTG
GCCTGTTGGGCCGAGTACTATGCCATGCCAACTGATGGTGGGATTCTTTGCTTACGCTAA
ATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGATGCCCAATGGCACAGCCGCGA
GGATGTCAAGAAAGCACTAACATTTGCAGAATATGAGAAAGCTCAGAGAACAAATGCGCT
CAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAA
AATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCA
CCTCATATCATCATGGGTTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCT
ATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAAT
AAAAAATTTTAGTCCCATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAA
TATGTCCATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGAT
TTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTG
TATAGATGCAGCACAGATGTGCTGATGCTTGTATCTTNCATATTCAAAGAGCTGGCATCA
AGTGTGAAATTTTGCCAGGGTTGGTACAAGTTGANGACAATCTGNTACATGNTGACTGGT
ATAGGTCTGCTTGGAGAAAGGCTGGAATATTCAAGTTAATTTTCCCCATGAGTCTTAAAA
GAA

consensusID : consensus_7009#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CTAACATTTGCAGAATACGAGAAAGCTCAGAGACCCAATGCGCTCAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAAAATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCACCTCATATCATCATGGGCTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCTATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAATAAAAAATTTTAGTCCCATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAATGTGTCCATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTATCTTCCATATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGTTTGTTACAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB000366             [CTAACATTTGCAGAATACGAGAAAGCTCAGAGACCCAATGCGCTCAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAAAATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCACCTCATATCATCATGGGCTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCTATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAATAAAAAATTTTAGTCCCATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAATGTGTCCATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTATCTTCCATATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGTTTGTTACAAAAAAAAAAAAAAAAAAAAA]




>consensus_7009#1
CTAACATTTGCAGAATACGAGAAAGCTCAGAGACCCAATGCGCTCAAGGTCAATCAAATA
TGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAAAATCGAAAGTGAGGAG
CCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCACCTCATATCATCATGG
GCTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCTATGAGCCTTGATCCTG
TTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAATAAAAAATTTTAGTCCC
ATGTATCATGTATGCCTTAGTTTCTTGTTAGTGTAGATGTGAAATGTGTCCATTGCCGGT
TGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGA
TTACAGAGCAAGTGTAATATTTTAGCATACAATTTGTAACAGTGTATAGATGCAGCACAG
ATGTGCTGATGTTTGTATCTTCCATATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCC
AGGTTTGTTACAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7009#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [ACCTTAACCACCACCAGACCAACCAAGGGAAGAATTAAGGGAAATTAAAAAATTTTAGTTCCCCCAATGGTATTCCAATGGTTAAGCCCCTTTAAGTTTTCTTGTTTAGTGTAGATGTGAAATATGTCACATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTAAAAAA]

[+] EMBL BI804418             [ACCTTAACCACCACCAGACCAACCAAGGGAAGAATTAAGGGAAATTAAAAAATTTTAGTTCCCCCAATGGTATTCCAATGGTTAAGCCCCTTTAAGTTTTCTTGTTTAGTGTAGATGTGAAATATGTCACATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTAAAAAA]




>consensus_7009#2
ACCTTAACCACCACCAGACCAACCAAGGGAAGAATTAAGGGAAATTAAAAAATTTTAGTT
CCCCCAATGGTATTCCAATGGTTAAGCCCCTTTAAGTTTTCTTGTTTAGTGTAGATGTGA
AATATGTCACATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTACATCACGTTCACTGGAG
GATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAGCATACATTTGTAACAG
TGTATAGATGCAGCACAGATGTGCTGATGTTTGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7009#0      AAACGTGGGAAGAGACTGGTATTAAGTTGGGGAAGTNATTTATCACAGTTCTCAACCGTG 60
consensus_7009#1      ------------------------------------------------------------
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      GCCTGTTGGGCCGAGTACTATGCCATGCCAACTGATGGTGGGATTCTTTGCTTACGCTAA 120
consensus_7009#1      ------------------------------------------------------------
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      ATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGATGCCCAATGGCACAGCCGCGA 180
consensus_7009#1      ------------------------------------------------------------
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      GGATGTCAAGAAAGCACTAACATTTGCAGAATATGAGAAAGCTCAGAGAACAAATGCGCT 240
consensus_7009#1      ----------------CTAACATTTGCAGAATACGAGAAAGCTCAGAGACCCAATGCGCT 44
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      CAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAA 300
consensus_7009#1      CAAGGTCAATCAAATATGCAAGGGTGTTGAGAAAAGGCAGAGCATCTCTGCTGACCTCAA 104
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      AATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCA 360
consensus_7009#1      AATCGAAAGTGAGGAGCCTGCTCCAATGTTCGTTCCTGGGCCCTATGCGATTGCTCACCA 164
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      CCTCATATCATCATGGGTTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCT 420
consensus_7009#1      CCTCATATCATCATGGGCTTTTGAAGGAGCACCAAAGGCACCTAGCTCCTTCTCCAACCT 224
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      ATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAA- 479
consensus_7009#1      ATGAGCCTTGATCCTGTTATTCATTTTCACTAAACAACACAACAACAGGAGATAGGGAA- 283
consensus_7009#2      ----------------ACCTTAACCACCACCAGACCAACCAAGGGAAGAATTAAGGGAAA 44
                                         ** *    *** * ** *  ***    ** *   ****** 

consensus_7009#0      -TAAAAAATTTTAGTCCCATGTATCATGT----ATGCCTTAG-----------TTTCTTG 523
consensus_7009#1      -TAAAAAATTTTAGTCCCATGTATCATGT----ATGCCTTAG-----------TTTCTTG 327
consensus_7009#2      TTAAAAAATTTTAGTTCCCCCAATGGTATTCCAATGGTTAAGCCCCTTTAAGTTTTCTTG 104
                       ************** **    **  * *    ***  * **           *******

consensus_7009#0      TT-AGTGTAGATGTGAAATATGTC-CATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTAC 581
consensus_7009#1      TT-AGTGTAGATGTGAAATGTGTC-CATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTAC 385
consensus_7009#2      TTTAGTGTAGATGTGAAATATGTCACATTGCCGGTTGTAATAAAAGGTTAAGAAAAGTAC 164
                      ** **************** **** ***********************************

consensus_7009#0      ATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAG 641
consensus_7009#1      ATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAG 445
consensus_7009#2      ATCACGTTCACTGGAGGATTTGGGGGGAGTACAGATTACAGAGCAAGTGTAATATTTTAG 224
                      ************************************************************

consensus_7009#0      CATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGCTTGTATCTTNCAT 701
consensus_7009#1      CATACAATTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTATCTTCCAT 505
consensus_7009#2      CATACA-TTTGTAACAGTGTATAGATGCAGCACAGATGTGCTGATGTTTGTAAAAAA--- 280
                      ****** *************************************** *****        

consensus_7009#0      ATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGGTTGGTACAAGTTGANGACAAT 761
consensus_7009#1      ATTCAAAGAGCTGGCATCAAGTGTGAAATTTTGCCAGGTTTGTTACAAAAAAAAAAAAAA 565
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      CTGNTACATGNTGACTGGTATAGGTCTGCTTGGAGAAAGGCTGGAATATTCAAGTTAATT 821
consensus_7009#1      AAAAAAA----------------------------------------------------- 572
consensus_7009#2      ------------------------------------------------------------
                                                                                  

consensus_7009#0      TTCCCCATGAGTCTTAAAAGAA 843
consensus_7009#1      ----------------------
consensus_7009#2      ----------------------