Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7012 cluster # 7012       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7012#0 length = 1268 sequences # 4  
consensusID : consensus_7012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1268
fasta sequence 
                              [AGGCAGATCTCGTATGCAGGTAGACCCTTTAAAGAGTGCCAGCTCAGGTATGTTTGTGAATCTCAGTGCCGTGATGCTACGTCTATGTGAGCCTTTTCTGGATAGGATGGAGTCTAAGAAGGACAAGATTGATGTCAATTACCTCTTCTGCAACGATAGAATTGATTTCAAGAATTTGACTGCAATAAATGCTTCTTCCGAGGAAGTATCATCTTGGATAGAGAACAGGGGCTATGAGCATGCTGAAGATAGTGCCAGTGGAGAGGCTCGCTTTGTTGAATCACAAGAAGCGACAAGCTCTGGCAACAATAGCACAGTTTCTCTTTCTTCTAAAGGCGGGTCACTTGTGAATTGCTCAAAGAAAGAGAATTTCTCATTTATTTGTGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCTGGGGCTGATGAAAGCTCTATCGGATTTCAAACATATTGCTCAGGATCTCGCAAGGTGCCAAGATGACTTGGATTCAAACAGAGCAATGAGAGATCAAGGAGGTGGTTCAGCACAGCTTGATCAAGATATAAAACGCTTAGAGAAGATAGTTGAGATTTTATCACAGGACAAACTCTGTTATGAAGCTCAGATAATTAGGGATGGTGCATTTCTTCAACGTGCACTATCTTTCTACAGATTAATGATACTATGGTCAGTAGACCTTGTTGGCGGATTTAAGATGCCTTTGCCATCACAATGTCCAAAGGAATTTGCTTGCATTCCAGAGCATTTCCTCGATGATGCAATGGATTTACTAGTTCTAACCTCTAGAATTCCAAAAGCTTTGGAAAGCTTTGCGTTGGATGACTTTCTCAACTTCATCATTATGTTCATGGCGGGCACTTCATACATTAAAAATCCTTACCTTAGAGCAAAGATGGTTGAAGTTTTGAATTGCTGGATGCCACAAAGAAGTGGGTTGAGTTCTACAGCCTCATTATTTGAGGCGCACCAACTATGTCTCGATTACCTGGTCAAAAATCTTCTAAAGCTTTATGTGGATATTGAATTCACTGGTTCCCATACACAATTCTTTGACAAGTTTAACATTCGACATAATATTGCTGAGCTTCTAGAGTATCTATGGGATGTCCCCAGTCATCGGAATGCATGGAGACGAATAGCTAAAGAGGAGGAGAAGGGCGTATATTTAAATTTTTTGAACTTCCTTATCAATGATAGCATCTATCTTCTTGATGAGAGTTTGAACAAAATCCTCGAACTGAAAGAAATAGAGGCTGAAATGG]

[+] EMBL CB640908             [AGGCAGATCTCGTATGCAGGTAGACCCTTTAAAGAGTGCCAGCTCAGGTATGTTTGTGAATCTCAGTGCCGTGATGCTACGTCTATGTGAGCCTTTTCTGGATAGGATGGAGTCTAAGAAGGACAAGATTGATGTCAATTACCTCTTCTGCAACGATAGAATTGATTTCAAGAATTTGACTGCAATAAATGCTTCTTCCGAGGAAGTATCATCTTGGATAGAGAACAGGGGCTATGAGCATGCTGAAGATAGTGCCAGTGGAGAGGCTCGCTTTGTTGAATCACAAGAAGCGACAAGCTCTGGCAACAATAGCACAGTTTCTCTTTCTTCTAAAGGCGGGTCACTTGTGAATTGCTCAAAGAAAGAGAATTTCTCATTTATTTGTGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCTGGGGCTGATGAAAGCTCTATCGGATTTCAAACATATTGCTCAGGATCTCGCAAGGTGCCAAGATGACTTGGATTCAAACAGAGCAATGAGAGATCAAGGAGGTGGTTCAGCACAGCTTGATCAAGATATAAAACGCTTAGAGAAGATAGTTGAGATTTTATCACAGGACAAACTCTGTTATGAAGCTCAGATAATTAGGGATGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB619295             [                                                                                                                                                                                                                             AGAACAGGGGCTATGAGCATGCTGAAGATAGTGCCAGTGGAGAGGCTCGCTTTGTTGAATCACAAGAAGCGACAAGCTCTGGCAACAATAGCACAGTTTCTCTTTCTTCTAAAGGCGGGTCACTTGTGAATTGCTCAAAGAAAGAGAATTTCTCATTTATTTGTGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCTGGGGCTGATGAAAGCTCTATCGGATTTCAAACATATTGCTCAGGATCTCGCAAGGTGCCAAGATGACTTGGATTCAAACAGAGCAATGAGAGATCAAGGAGGTGGTTCAGCACAGCTTGATCAAGATATAAAACGCTTAGAGAAGATAGTTGAGATTTTATCACAGGACAAACTCTGTTATGAAGCTCAGATAATTAGGGATGGTGCATTTCTTCAACGTGCACTATCTTTCTACAGATTAATGATACTATGGTCAGTAGACCTTGTTGGCGGATTTAAGATGCCTTTGCCATCACAATGTCCAAAGGAATTTGCTTGCATTCCAGAGCATTTCCTCGATGATGCAATGGATTTACTAGTTCTAACCTCTAGAATTCCAAAAGCTTTGGAAAGCTTTGCGTTGGATGACTTTCTCAACTTCATCATTATGTTCATGGCGGGCACTTCATACATTAAAAATCCTTACCTTAGAGCAAAGATGGTTGAAGTTTTGAATTGCTGGATGCCACAAAGAAGTGGGTTGAGTTCTACAGCCTCATTATTTGAGGCGCA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU078410             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGGTTCAGCACAGCTTGATCAAGATATAAAACGCTTAGAGAAGATAGTTGAGATTTTATCACAGGACAAACTCTGTTATGAAGCTCAGATAATTAGGGATGGTGCATTTCTTCAACGTGCACTATCTTTCTACAGATTAATGATACTATGGTCAGTAGACCTTGTTGGCGGATTTAAGATGCCTTTGCCATCACAATGTCCAAAGGAATTTGCTTGCATTCCAGAGCATTTCCTCGATGATGCAATGGATTTACTAGTTCTAACCTCTAGAATTCCAAAAGCTTTGGAAAGCTTTGCGTTGGATGACTTTCTCAACTTCATCATTATGTTCATGGCGGGCACTTCATACATTAAAAATCCTTACCTTAGAGCAAAGATGGTTGAAGT                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB643846             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGATTCTATCACAGGACAAACTCTGTTATGAAGCTCAGATAATTAGGGATGGTGCATTTCTTCAACGTGCACTATCTTTCTACAGATTAATGATACTATGGTCAGTAGACCTTGTTGGCGGATTTAAGATGCCTTTGCCATCACAATGTCCAAAGGAATTTGCTTGCATTCCAGAGCATTTCCTCGATGATGCAATGGATTTACTAGTTCTAACCTCTAGAATTCCAAAAGCTTTGGAAAGCTTTGCGTTGGATGACTTTCTCAACTTCATCATTATGTTCATGGCGGGCACTTCATACATTAAAAATCCTTACCTTAGAGCAAAGATGGTTGAAGTTTTGAATTGCTGGATGCCACAAAGAAGTGGGTTGAGTTCTACAGCCTCATTATTTGAGGGGCACCAACTATGTCTCGATTACCTGGTCAAAAATCTTCTAAAGCTTTATGTGGATATTGAATTCACTGGTTCCCATACACAATTCTTTGACAAGTTTAACATTCGACATAATATTGCTGAGCTTCTAGAGTATCTATGGGATGTCCCCAGTCATCGGAATGCATGGAGACGAATAGCTAAAGAGGAGGAGAAGGGCGTATATTTAAATTTTTTGAACTTCCTTATCAATGATAGCATCTATCTTCTTGATGAGAGTTTGAACAAAATCCTCGAACTGAAAGAAATAGAGGCTGAAATGG]




>consensus_7012#0
AGGCAGATCTCGTATGCAGGTAGACCCTTTAAAGAGTGCCAGCTCAGGTATGTTTGTGAA
TCTCAGTGCCGTGATGCTACGTCTATGTGAGCCTTTTCTGGATAGGATGGAGTCTAAGAA
GGACAAGATTGATGTCAATTACCTCTTCTGCAACGATAGAATTGATTTCAAGAATTTGAC
TGCAATAAATGCTTCTTCCGAGGAAGTATCATCTTGGATAGAGAACAGGGGCTATGAGCA
TGCTGAAGATAGTGCCAGTGGAGAGGCTCGCTTTGTTGAATCACAAGAAGCGACAAGCTC
TGGCAACAATAGCACAGTTTCTCTTTCTTCTAAAGGCGGGTCACTTGTGAATTGCTCAAA
GAAAGAGAATTTCTCATTTATTTGTGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCT
GGGGCTGATGAAAGCTCTATCGGATTTCAAACATATTGCTCAGGATCTCGCAAGGTGCCA
AGATGACTTGGATTCAAACAGAGCAATGAGAGATCAAGGAGGTGGTTCAGCACAGCTTGA
TCAAGATATAAAACGCTTAGAGAAGATAGTTGAGATTTTATCACAGGACAAACTCTGTTA
TGAAGCTCAGATAATTAGGGATGGTGCATTTCTTCAACGTGCACTATCTTTCTACAGATT
AATGATACTATGGTCAGTAGACCTTGTTGGCGGATTTAAGATGCCTTTGCCATCACAATG
TCCAAAGGAATTTGCTTGCATTCCAGAGCATTTCCTCGATGATGCAATGGATTTACTAGT
TCTAACCTCTAGAATTCCAAAAGCTTTGGAAAGCTTTGCGTTGGATGACTTTCTCAACTT
CATCATTATGTTCATGGCGGGCACTTCATACATTAAAAATCCTTACCTTAGAGCAAAGAT
GGTTGAAGTTTTGAATTGCTGGATGCCACAAAGAAGTGGGTTGAGTTCTACAGCCTCATT
ATTTGAGGCGCACCAACTATGTCTCGATTACCTGGTCAAAAATCTTCTAAAGCTTTATGT
GGATATTGAATTCACTGGTTCCCATACACAATTCTTTGACAAGTTTAACATTCGACATAA
TATTGCTGAGCTTCTAGAGTATCTATGGGATGTCCCCAGTCATCGGAATGCATGGAGACG
AATAGCTAAAGAGGAGGAGAAGGGCGTATATTTAAATTTTTTGAACTTCCTTATCAATGA
TAGCATCTATCTTCTTGATGAGAGTTTGAACAAAATCCTCGAACTGAAAGAAATAGAGGC
TGAAATGG

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)