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Oryza sativa
cluster # 7013 cluster # 7013       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7013#0 length = 809 sequences # 2  
consensus_7013#1 length = 592 sequences # 2  

consensusID : consensus_7013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 809
fasta sequence
                              [TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTACCACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT]

[+] EMBL CB646201             [TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGG                                                                   ]
[+] EMBL CB668213             [                            GGTCCTTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGATTGGATGGGATAGGTCAGTACCACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT]


>consensus_7013#0 TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTA AGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTA AATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTT GCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAAT ATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATT CAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGA TCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCAT GCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCAT ATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGC TAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATT CTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTC TGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTA TTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTACCACCACTTTGAACGATG AGGGTGATGAGATGATGTTCCAGTTATAT



consensusID : consensus_7013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 592
fasta sequence
                              [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATT-TGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT]

[+] EMBL CB639493             [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATT TGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT]
[+] EMBL CB638520             [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTATGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTA ]


>consensus_7013#1 CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTT ATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTG GTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGT TTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATG TTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCAT GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7013#0      ------------------------------------------------------------
consensus_7013#1      CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTT 60
                                                                                  

consensus_7013#0      ------------------------------------------------------------
consensus_7013#1      ATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTG 120
                                                                                  

consensus_7013#0      ------------------------------------------------------------
consensus_7013#1      GTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGT 180
                                                                                  

consensus_7013#0      ------------------------------------------------------------
consensus_7013#1      TTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATG 240
                                                                                  

consensus_7013#0      -----------------TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCAT 43
consensus_7013#1      TTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCAT 300
                                       ******    *   *****************************

consensus_7013#0      GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC 103
consensus_7013#1      GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC 360
                      ************************************************************

consensus_7013#0      TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG 163
consensus_7013#1      TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG 420
                      ************************************************************

consensus_7013#0      CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT 223
consensus_7013#1      CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT 480
                      ************************************************************

consensus_7013#0      TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT 283
consensus_7013#1      TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT 540
                      ************************************************************

consensus_7013#0      CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTT 343
consensus_7013#1      CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT-------- 592
                      ******************************************** *******        

consensus_7013#0      GATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGT 403
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      GTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATA 463
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      TACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTAC 523
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      ATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAA 583
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      CAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGAC 643
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      CCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAG 703
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      ATATATATATGCTTGTATTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTAC 763
consensus_7013#1      ------------------------------------------------------------
                                                                                  

consensus_7013#0      CACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT 809
consensus_7013#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)