These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence [TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTACCACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT] [+] EMBL CB646201 [TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGG ] [+] EMBL CB668213 [ GGTCCTTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTTGATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGTGTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATATACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTACATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAACAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGACCCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAGATATATATATGCTTGTATTGGGTGTGACATGTAATTGGATTGGATGGGATAGGTCAGTACCACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT] consensusID : consensus_7013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATT-TGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT] [+] EMBL CB639493 [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATT TGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT] [+] EMBL CB638520 [CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTTATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTGGTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGTTTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATGTTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCATGACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTCTAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTGCGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGTTGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGTCCTTGACATTATGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7013#0 ------------------------------------------------------------ consensus_7013#1 CGTATCATCTTATTTGTTAACTACTAATAATCTTTTTGGTTGCGACTTGCGAGCTTATTT 60 consensus_7013#0 ------------------------------------------------------------ consensus_7013#1 ATCCTAAAAGTTATACGACCATAGGAAAACTTCTGTTGGATACTGAGGTTGATCAATGTG 120 consensus_7013#0 ------------------------------------------------------------ consensus_7013#1 GTCTTATTTTATTTTAATTTTTGGGGGCACAAGAACAATTCTTTATGAACTAGGTTAGGT 180 consensus_7013#0 ------------------------------------------------------------ consensus_7013#1 TTTACCAAATGCCCTGTTTGTTCTGTCAAGAGTATTTGTCACTGACGAGCCCTGATTATG 240 consensus_7013#0 -----------------TATCACCCTTTAAAAATTTCTCTTTCGAGGTTATTGGTCTCAT 43 consensus_7013#1 TTTGAACAATCACTATGTATCACTAAGTTTCAATTTCTCTTTCGAGGTTATTGGTCTCAT 300 ****** * ***************************** consensus_7013#0 GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC 103 consensus_7013#1 GACATAGTTATGTTCTAAGCATATATTGATATATAACTTACATAGATATATGATGTTGTC 360 ************************************************************ consensus_7013#0 TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG 163 consensus_7013#1 TAGTTTTGTAGCTCCTAAATGTTTCCACCTCATTGATGGCCTGATTGAAGTGTACATTTG 420 ************************************************************ consensus_7013#0 CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT 223 consensus_7013#1 CGCTTCATGACAATCTTGCTTCAAATTGCTTAAATTCTTCCATGGTTATTTCACAGTTGT 480 ************************************************************ consensus_7013#0 TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT 283 consensus_7013#1 TGGATTCCATTAATAATATTGATTTTCTGTGAACAATGAGTATCATACTACTAAGATGGT 540 ************************************************************ consensus_7013#0 CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAGGACCTATGTCTTCTT 343 consensus_7013#1 CCTTGACATTTGTTATTCAAATTCTTGCTGAATATGTACTGTAAAGACCTAT-------- 592 ******************************************** ******* consensus_7013#0 GATACATCCTTTTATGATCATCTTCATGGATGCTGCAAGCTTCACAAGCAGTATATATGT 403 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 GTCTGTATGTGCACCATGCATGAATGGTCAAATCGGAACCGGGAACTTCATATATATATA 463 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 TACTCCATGTTGTGCATATCAAGATCCCCTAGTTGGTACATCACTAGTTTTTTTTTCTAC 523 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 ATGTTATTTGGTCTTGCTAACATTTGTTCATGTTAGAATATTTGCATCTGTAGTTTGTAA 583 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 CAAAATGCACCTGAATTCTATTTGAATCTTCACTATATACTTCTAAGCACTTGCTCTGAC 643 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 CCTCTGATATATACCTCTGATGCTGGTGGGCTCCAAAAAAGATTGTCACGTAACTTGGAG 703 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 ATATATATATGCTTGTATTGGGTGTGACATGTAATTGGGTTGGATGGGATAGGTCAGTAC 763 consensus_7013#1 ------------------------------------------------------------ consensus_7013#0 CACCACTTTGAACGATGAGGGTGATGAGATGATGTTCCAGTTATAT 809 consensus_7013#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||