cluster # 7019

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Oryza sativa
cluster # 7019 cluster # 7019 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7019#0 length = 939 sequences # 3

consensus_7019#1 length = 541 sequences # 1

consensusID : consensus_7019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 939
fasta sequence

                              [TGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCCGCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCCGACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGCCCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAGTCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGGAACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGCGGTGGGTGCAGT-CGGTGGTGCGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCACCGCGCCGGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGTGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAAGTTCTCTCACTCTGTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCACCATTGTAGCTCTTCGTATATGCATCTTCATTTTGATGCTGTGAAGTATATGTAGGAGTATGACACATGAATAAACAG]

[+] EMBL AK060360             [TGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCCGCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCCGACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGCCCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAGTCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGGAACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGCGGTGGGTGCAGT CGGTGGTGCGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCACCGCGCCGGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGTGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAAGTTCTCTCACTCTGTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCACCATTGTAGCTCTTCGTATATGCATCTTCATTTTGATGCTGTGAAGTATATGTAGGAGTATGACACATGAATAAACAG]
[+] EMBL AU094834             [                                                                                                                                                                                                                                                                                                                                      GGTGNACCTCCCGCGGTGGGTGCAGTCCGGTGGTGCGGGAGGAGTGGACCGCGGAGGTNTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCGGAGGAGGANATGGTGGCGCTGCTGCAGGTGGCNATGGCGTGCGTCGCCACNGCGCCGGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAAGTTCTCTCACTCTGTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCAaaaa                                                                          ]
[+] EMBL CA766675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACATGTCAGGGNAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAAGTTCTCTCACTCTGTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTC                                                                                                                        ]




>consensus_7019#0
TGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCC
GCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCC
GACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGC
CCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAG
TCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGG
AACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGCGGTGGGTGCAGTCGGTGGTG
CGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCG
GAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCACCGCGCCGGAC
GCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGG
CGGACAACGACGGTGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACG
CCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAAT
TGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAAGTTCTCTCACTCTGTTTTTTTT
TTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATT
GTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTT
TTCAGTCCGTATCTACTACCACCATTGTAGCTCTTCGTATATGCATCTTCATTTTGATGC
TGTGAAGTATATGTAGGAGTATGACACATGAATAAACAG

consensusID : consensus_7019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GACCTCCCGCCGGTGGGTCCATCGGTGTGCGGGAGGAGTGGACCCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTTNCCATGGCGTGCGTCGCCATCCGCGCCGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAACGTTCTCNCACCTCTGTTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCCAAAAAAAAAA]

[+] EMBL BM419023             [GACCTCCCGCCGGTGGGTCCATCGGTGTGCGGGAGGAGTGGACCCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTTNCCATGGCGTGCGTCGCCATCCGCGCCGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAACGTTCTCNCACCTCTGTTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCCAAAAAAAAAA]




>consensus_7019#1
GACCTCCCGCCGGTGGGTCCATCGGTGTGCGGGAGGAGTGGACCCGGAGGTGTTCGACGT
GGAGCTGGTGCGGCTCGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTTNCC
ATGGCGTGCGTCGCCATCCGCGCCGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATG
ATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCG
AGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGT
AATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTG
GCGAACGTTCTCNCACCTCTGTTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCT
CTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACC
TGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCCAAAAAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7019#0      TGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCC 60
consensus_7019#1      ------------------------------------------------------------
                                                                                  

consensus_7019#0      GCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCC 120
consensus_7019#1      ------------------------------------------------------------
                                                                                  

consensus_7019#0      GACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGC 180
consensus_7019#1      ------------------------------------------------------------
                                                                                  

consensus_7019#0      CCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAG 240
consensus_7019#1      ------------------------------------------------------------
                                                                                  

consensus_7019#0      TCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGG 300
consensus_7019#1      ------------------------------------------------------------
                                                                                  

consensus_7019#0      AACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGC-GGTGGGTGCAGTCGGTGGT 359
consensus_7019#1      ------------------------------GACCTCCCGCCGGTGGGTCCA-TCGGTG-T 28
                                                    ********** ******* ** ****** *

consensus_7019#0      GCGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGC 419
consensus_7019#1      GCGGGAGGAGTGGACC-CGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCG-CGGGAGCGC 86
                      **************** ********************************* *********

consensus_7019#0      GGAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCA-CCGCGCCGG 478
consensus_7019#1      GGAGGAGGAGATGGTGGCGCTGCTGCAGGTTNCCATGGCGTGCGTCGCCATCCGCGCCG- 145
                      ******************************  ****************** ******** 

consensus_7019#0      ACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACG 538
consensus_7019#1      ACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACG 205
                      ************************************************************

consensus_7019#0      GGCGGACAACGACGGTGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGA 598
consensus_7019#1      GGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGA 265
                      *************** ********************************************

consensus_7019#0      CGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAA 658
consensus_7019#1      CGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAA 325
                      ************************************************************

consensus_7019#0      ATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAA-GTTCTCTCAC-TCTGTTTT 716
consensus_7019#1      ATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAACGTTCTCNCACCTCTGTTTT 385
                      **************************************** ****** *** ********

consensus_7019#0      TTTTTTT-GTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTT 775
consensus_7019#1      TTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTT 445
                      ******* ****************************************************

consensus_7019#0      CCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGT 835
consensus_7019#1      CCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGT 505
                      ************************************************************

consensus_7019#0      AATTTTTCAGTCCGTATCTACTACCACCATTGTAGCTCTTCGTATATGCATCTTCATTTT 895
consensus_7019#1      AATTTTTCAGTCCGTATCTACTACCCAAAAAAAAAA------------------------ 541
                      *************************   *    *                          

consensus_7019#0      GATGCTGTGAAGTATATGTAGGAGTATGACACATGAATAAACAG 939
consensus_7019#1      --------------------------------------------