These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1390 fasta sequence [CTCACCACAGGGCACGATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGCCGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTCCCTCTCCCTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCCCCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAAGCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACCTTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCACGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGGCTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGCATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCCTACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATCGAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGATATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAGGAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTATGCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGC-AAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTGGGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGAAAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAGTGCACTCTTGTTCTCATTTTAAAAAAAAAA] [+] EMBL AK103427 [CTCACCACAGGGCACGATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGCCGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTCCCTCTCCCTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCCCCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAAGCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACCTTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCACGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGGCTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGCATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCCTACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATCGAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGATATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAGGAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTATGCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGC AAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTGGGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGAAAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAGTGCACTCTTG ] [+] EMBL AK060034 [ GATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGCCGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTCCCTCTCCTTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCCCCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAAGCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACCTTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCACGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGGCTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGCATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCCTACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATCGAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGATATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAGGAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTATGCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGCAAAACTTGATTTCTTGAGGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAATCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTGGGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAACGGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAGACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTCTCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGAAAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGATAATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACAAACATCTAATTTTAGTGCACTCTTG ] [+] EMBL BI799609 [ ccGGAACTTGATAATGTTCTGCCTTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGTGATTTCATCTGTGCTTTTTGAGACCAACATCTAATTTTAGTGCCCTCTTGTTCTCATTTTAAAAAAAAAA] consensusID : consensus_7030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [AATGTTCGGCCTTGTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGGGATTTCATCTGGGCTTTTTGAGAACCAAACATCTAATTGTTAGGTCCACCTGCGGTGGTTGCTCACGTGTTTAAAAAAA] [+] EMBL BI803884 [AATGTTCGGCCTTGTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGGGATTTCATCTGGGCTTTTTGAGAACCAAACATCTAATTGTTAGGTCCACCTGCGGTGGTTGCTCACGTGTTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7030#0 CTCACCACAGGGCACGATACCGCCGTCCGTTCGCGGCGCGACCCTTCGCCGCCGCGCCGC 60 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 CGCGCCGGCGCTATGCAGCGCCTCCAAAAGCAGCTCCTTCCCGCCCTGCGCGCCGCCTTC 120 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 CCTCTCCCTGCCTCCCACTTCAGCAGCCGCCTTCTCTCCGCCTCCACCGCCACCTTATCC 180 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 CCCACCCGCTTCGTCGACGAGGACGCCCTCGTCGCCGCCTGCGGCCTCACCGGAGCCGAA 240 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GCCCTCAAGGCCTCGAAGCGTCTACAGAAGGTACCCTCAAATCTAGACGCCGCCCTCACC 300 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 TTCCTCGCCTTTCTCGCCGACTTCCGCCTCTCCAAAGACGACATCGCCGCCGCAAGCTCA 360 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 CGGTACCCGCGGTTCCTCCATCTCAAGGTGGACGAAACCCTAACCTCCCAAGTAGCCCGG 420 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 CTCCGGGATATCGGCCTATCCACTCCCGAGATTGGCCGCCTCATTACCATCGCCCCCTGC 480 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 ATCCTCTCCAATCCTCGCACGATCTCCCGCCTTGAATTCTACCTCTCCTTTTTGGGCTCC 540 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 TACCCCAGGGTGCACTCCGCCCTTCGGAACAATTCCTCCCTTCTACGGCGAAACAACATC 600 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GAGAGTGAGGTCAAGCCCAACATTGCATTCCTGGAGCAGTGCGGCCTAACTACTTGTGAT 660 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 ATTGCCAAGATCCTCATGTCTGGCTCTAGGATACTCATTATGCAGCCAGAGCATGTCAAG 720 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GAAATTGTGGCGTGTGCAGACAAGTTCGGTATGCCCCGTGAGTCAGCTGGTTTCAGGTAT 780 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GCCCTGATGGCTGTTACCGGCATCAGCCCAGTGAGGGTCAGCGCAAACTTGATTTCTTGA 840 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GGATGGTTATTGGATGCTCAGATGCCCAGCTACACATTGCGGTGTCTAGGTTTCCACTAA 900 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 TCCTGACATACTCAGAAGTTAAGCTGAGCCGCTCACTGGAATTCCTGAAAGCGGAGGTTG 960 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GGTTGGAGCCTCAGTACATTGTGCTCCGGCCAGCATTGCTCGGCTATAGCATTCAGAAAC 1020 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 GGCTGATGCCGCGTTATCATGTCATGAAGGTTCTGAATGAAAAGGGCCTGCTGAAGAAAG 1080 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 ACACTGATTTTTACTCTATGGTTAAAATAGTTGAAGAGAGCTTTTTTAAGAAGTTCCTTC 1140 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 TCCCATACCACAGGTCTGTTCCAGGACTTGAAAAAGCTTATCTGGCTGCCCGTGAAGGGA 1200 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 AAATGTTTCCTGAAATCTAAAACAGAGATGCTGGAGGTTTATTCTGCCTAGGAACTTGAT 1260 consensus_7030#1 ------------------------------------------------------------ consensus_7030#0 AATGTTCTGCATTTTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGT 1320 consensus_7030#1 AATGTTCGGCCTTGTACATCTTGCTCAGTTCTTAGATGATTTCTAGCGATCTGTATTTGG 60 ******* ** ** ********************************************* consensus_7030#0 GATTTCATCTGTGCTTTTTGAGA--CAAACATCTAATTTT--AGTGCACTC-------TT 1369 consensus_7030#1 GATTTCATCTGGGCTTTTTGAGAACCAAACATCTAATTGTTAGGTCCACCTGCGGTGGTT 120 *********** *********** ************* * ** *** ** consensus_7030#0 GTTCTCATTTTAAAAAAAAAA 1390 consensus_7030#1 GCTCACGTGTTTAAAAAAA-- 139 * ** * * ** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||