These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1673 fasta sequence [ACAGAAATCTCAGGGAGGAGCTACGGCTATGACAATTCCCCAAGAGCCAGTGAGTTCGATGAACATGATCTGACCATCAGGAGGCTCAACGAGTACAGAGCACGCCTGTCGAGTCTTCAGAAAGAGAAGTCTGACCGGCTTCACAGGGTTCTTGAGCACGTCACCGAGGTGCACTCCCTGTGCGACGTGCTCGGCGAGGACTTCATCGCCATCGTCAACGAGGTCCACCCGGGGCTGCACGAGACGGCGGATCCCGGCAAGCCCACCAGCATCAGCGACAGCACGCTGGCCAGCCTCTCCCAGGTCGTCGCGATGCTCACGTCGGAGAAGACCAAGCGAGCAGCCATGCTGCGAGAGGCCGTGGTGCCACTGGTCGAGCTCTGGGACCTGATGGACTTGCCGGAGGAGGAGCGGCGGAGCTTCAGGAAGGCGACGGCCGTTCTGAGGCCGGCGAGGGAGGAGGCTCTGTCCTCCGGCGTGCTGTCCATCGCAACCATCAAGAAGACGGAGGAGGAGGTCGAGAGGTTGACGAGGCTCAAGGCTGGCCGGATGAAGGAGCTCGTGCTCAAGAGGAGGTTGGAGCTGGAGAGCATCTGCAGGAGCATGCACGTCGAGCCTGACACCAGCACTGTGCCGGAGAAGTCCATCGCGTTGATTGATTCTGGCCTTGTGAATCCTTCTGAGCTCATGGCCAGCATCGACGAGCAGATCGCGAAGGCGAAGGAGGAGCAGCAGTCCAGGAAAGAAATCATGGACAAGATCAACAAGTGGCTGCTGGCGTGTGAGGAAGAGAAATGGCTCGAGGAGTACAATTTGGAAGAGAACAGATTCAATACTGGAAGAATAGCGCGTCTGAACCTGAAACGCGCCGAAAAGGCAAGGCTTATCATCAACAAGATTCCAGCAATGATCGACAACCTGATGAGTCGAACACTAGTCTGGGAGACCGAAAGAAACAAGCCTTTTCTGTATGACGGGGCTCGCTTGGTCGCCGTGTTGGAAGAGCACAAGCAAGCCAGGCTGAGGCAGGAAGAAGAGAGGAGGCGCCTCCGGGAGCAGAAGAAGCTGCGCACTCTGTTCAGCGAGAAAGAGGCGATGCCTCACCTGAAAAGGCCCGGCAGCAGCTTCGGCAGGGCGACGGAGCCGTGCAACATGAGCCGGAAGAGGGTCGACGCCGCGCCGCCGTCGGTGCGCAGCAGCAGCGGGTCCAGCGGGAGCAGCGGCGGCGGCGCGGCTGATCCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTTATCATAAAAAA] [+] EMBL AK108923 [ACAGAAATCTCAGGGAGGAGCTACGGCTATGACAATTCCCCAAGAGCCAGTGAGTTCGATGAACATGATCTGACCATCAGGAGGCTCAACGAGTACAGAGCACGCCTGTCGAGTCTTCAGAAAGAGAAGTCTGACCGGCTTCACAGGGTTCTTGAGCACGTCACCGAGGTGCACTCCCTGTGCGACGTGCTCGGCGAGGACTTCATCGCCATCGTCAACGAGGTCCACCCGGGGCTGCACGAGACGGCGGATCCCGGCAAGCCCACCAGCATCAGCGACAGCACGCTGGCCAGCCTCTCCCAGGTCGTCGCGATGCTCACGTCGGAGAAGACCAAGCGAGCAGCCATGCTGCGAGAGGCCGTGGTGCCACTGGTCGAGCTCTGGGACCTGATGGACTTGCCGGAGGAGGAGCGGCGGAGCTTCAGGAAGGCGACGGCCGTTCTGAGGCCGGCGAGGGAGGAGGCTCTGTCCTCCGGCGTGCTGTCCATCGCAACCATCAAGAAGACGGAGGAGGAGGTCGAGAGGTTGACGAGGCTCAAGGCTGGCCGGATGAAGGAGCTCGTGCTCAAGAGGAGGTTGGAGCTGGAGAGCATCTGCAGGAGCATGCACGTCGAGCCTGACACCAGCACTGTGCCGGAGAAGTCCATCGCGTTGATTGATTCTGGCCTTGTGAATCCTTCTGAGCTCATGGCCAGCATCGACGAGCAGATCGCGAAGGCGAAGGAGGAGCAGCAGTCCAGGAAAGAAATCATGGACAAGATCAACAAGTGGCTGCTGGCGTGTGAGGAAGAGAAATGGCTCGAGGAGTACAATTTGGAAGAGAACAGATTCAATACTGGAAGAATAGCGCGTCTGAACCTGAAACGCGCCGAAAAGGCAAGGCTTATCATCAACAAGATTCCAGCAATGATCGACAACCTGATGAGTCGAACACTAGTCTGGGAGACCGAAAGAAACAAGCCTTTTCTGTATGACGGGGCTCGCTTGGTCGCCGTGTTGGAAGAGCACAAGCAAGCCAGGCTGAGGCAGGAAGAAGAGAGGAGGCGCCTCCGGGAGCAGAAGAAGCTGCGCACTCTGTTCAGCGAGAAAGAGGCGATGCCTCACCTGAAAAGGCCCGGCAGCAGCTTCGGCAGGGCGACGGAGCCGTGCAACATGAGCCGGAAGAGGGTCGACGCCGCGCCGCCGTCGGTGCGCAGCAGCAGCGGGTCCAGCGGGAGCAGCGGCGGCGGCGCGGCTGATCCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGG ] [+] EMBL AU223139 [ CCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTTATCATAAAAAA] [-] EMBL CB637134 [ tCCTTCAGGCCGCGGTCGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTGCGAGGCGGCTGTCGGCGGCGGCGCCGTTCAACTACGTCGCCGTGTCCAAGGGCGGCGGCGGCGGCGGCGGCTTGTCGTCGTCGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGATACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGG ] consensusID : consensus_7033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CTGAAAGCCCGCACATCTTCNCGTCAGGGCNACAGACCGTGCAACATGACGCCCGGNAGAGGTTCGACTCCTGCGCCGCCGTCAGGTGCCACATCATCCGGGTCCATGCGGGACCATTCGCGCGGCCGCCTGATCCCTTCAGCCCGTCGTCGCGCAGCCGGATCGGGCACGGGCCACTCGGCGAGTTCTTCAGGAGCAGCGGTGCGAGGCAGGCTGTCGGCAGCAGGCNCCGTTCAACTACGTCAGCCGTGTCCAAGGGCGNCGGCAGGCGGCAGGCAGGCTTGTCGTCGTCAGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGCCTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTAAAAAAAAAA] [+] EMBL BI807024 [CTGAAAGCCCGCACATCTTCNCGTCAGGGCNACAGACCGTGCAACATGACGCCCGGNAGAGGTTCGACTCCTGCGCCGCCGTCAGGTGCCACATCATCCGGGTCCATGCGGGACCATTCGCGCGGCCGCCTGATCCCTTCAGCCCGTCGTCGCGCAGCCGGATCGGGCACGGGCCACTCGGCGAGTTCTTCAGGAGCAGCGGTGCGAGGCAGGCTGTCGGCAGCAGGCNCCGTTCAACTACGTCAGCCGTGTCCAAGGGCGNCGGCAGGCGGCAGGCAGGCTTGTCGTCGTCAGATGATGTCATGAAGCGCGTAGCTAGGTGGGCCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTTTTGTACCGCTCGGAAGCTTCTAGAAGCCTCGTTTGTGACGGCGGATTTGATTATTGGTTTATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTATGTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7033#0 ACAGAAATCTCAGGGAGGAGCTACGGCTATGACAATTCCCCAAGAGCCAGTGAGTTCGAT 60 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 GAACATGATCTGACCATCAGGAGGCTCAACGAGTACAGAGCACGCCTGTCGAGTCTTCAG 120 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 AAAGAGAAGTCTGACCGGCTTCACAGGGTTCTTGAGCACGTCACCGAGGTGCACTCCCTG 180 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 TGCGACGTGCTCGGCGAGGACTTCATCGCCATCGTCAACGAGGTCCACCCGGGGCTGCAC 240 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 GAGACGGCGGATCCCGGCAAGCCCACCAGCATCAGCGACAGCACGCTGGCCAGCCTCTCC 300 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 CAGGTCGTCGCGATGCTCACGTCGGAGAAGACCAAGCGAGCAGCCATGCTGCGAGAGGCC 360 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 GTGGTGCCACTGGTCGAGCTCTGGGACCTGATGGACTTGCCGGAGGAGGAGCGGCGGAGC 420 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 TTCAGGAAGGCGACGGCCGTTCTGAGGCCGGCGAGGGAGGAGGCTCTGTCCTCCGGCGTG 480 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 CTGTCCATCGCAACCATCAAGAAGACGGAGGAGGAGGTCGAGAGGTTGACGAGGCTCAAG 540 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 GCTGGCCGGATGAAGGAGCTCGTGCTCAAGAGGAGGTTGGAGCTGGAGAGCATCTGCAGG 600 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 AGCATGCACGTCGAGCCTGACACCAGCACTGTGCCGGAGAAGTCCATCGCGTTGATTGAT 660 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 TCTGGCCTTGTGAATCCTTCTGAGCTCATGGCCAGCATCGACGAGCAGATCGCGAAGGCG 720 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 AAGGAGGAGCAGCAGTCCAGGAAAGAAATCATGGACAAGATCAACAAGTGGCTGCTGGCG 780 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 TGTGAGGAAGAGAAATGGCTCGAGGAGTACAATTTGGAAGAGAACAGATTCAATACTGGA 840 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 AGAATAGCGCGTCTGAACCTGAAACGCGCCGAAAAGGCAAGGCTTATCATCAACAAGATT 900 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 CCAGCAATGATCGACAACCTGATGAGTCGAACACTAGTCTGGGAGACCGAAAGAAACAAG 960 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 CCTTTTCTGTATGACGGGGCTCGCTTGGTCGCCGTGTTGGAAGAGCACAAGCAAGCCAGG 1020 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 CTGAGGCAGGAAGAAGAGAGGAGGCGCCTCCGGGAGCAGAAGAAGCTGCGCACTCTGTTC 1080 consensus_7033#1 ------------------------------------------------------------ consensus_7033#0 AGCGAGAAAGAGGCGATGCCTCACCTGAAAAGGCCCGGCAGCAGCTTCGGCAGGGCGACG 1140 consensus_7033#1 ------------------------CTGAAA--GCCCGCACATCTTCNCGTCAGGGCNACA 34 ****** ***** ** ****** ** consensus_7033#0 GAGCCGTGCAACATGAG--CCGGAAGAGGGTCGACGCC-GCGCCGCCGTCGGTGCGCAGC 1197 consensus_7033#1 GA-CCGTGCAACATGACGCCCGGNAGAGGTTCGACTCCTGCGCCGCCGTCAG-GTGCCAC 92 ** ************* **** ***** ***** ** *********** * * ** * consensus_7033#0 AGCAGC-GGGTCCA-GCGGGAGCAGCGGCGGCGGCGCGGCTGATCCCTTCAGGCCGCGGT 1255 consensus_7033#1 ATCATCCGGGTCCATGCGGGACCATTCGCG-CGGC-CGCCTGATCCCTTCAGCCCGTCGT 150 * ** * ******* ****** ** *** **** ** ************* *** ** consensus_7033#0 CGTCGGCGGCGGCCGGATCGGGCGCGGGGCACTGCGGCGAGTTCTTCAGGAGCGGCGGTG 1315 consensus_7033#1 CGC-----GCAGCCGGATCGGGCACGGGCCACT-CGGCGAGTTCTTCAGGAGCAGCGGTG 204 ** ** ************ **** **** ******************* ****** consensus_7033#0 CGAGGC-GGCTGTCGGCGGC-GGCGCCGTTCAACTACGTC-GCCGTGTCCAAGGGCGGCG 1372 consensus_7033#1 CGAGGCAGGCTGTCGGCAGCAGGCNCCGTTCAACTACGTCAGCCGTGTCCAAGGGCGNCG 264 ****** ********** ** *** *************** **************** ** consensus_7033#0 GC-GGCGGCGGC--GGCTTGTCGTCGTC-GATGATGTCATGAAGCGCGTAGCTAGGTGGG 1428 consensus_7033#1 GCAGGCGGCAGGCAGGCTTGTCGTCGTCAGATGATGTCATGAAGCGCGTAGCTAGGTGGG 324 ** ****** * ************** ******************************* consensus_7033#0 CCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTT 1488 consensus_7033#1 CCCGTGTAGATAACACGACACTAGCTAGCTGTCCTGAAACACATGCACTTTTATTCCCTT 384 ************************************************************ consensus_7033#0 TTGTACCGCTCGGAAGCTTCTAGAAGGTTCGTTTGTGACGGCGGATTTGATTATTGGTTT 1548 consensus_7033#1 TTGTACCGCTCGGAAGCTTCTAGAAGCCTCGTTTGTGACGGCGGATTTGATTATTGGTTT 444 ************************** ******************************** consensus_7033#0 ATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTAT 1608 consensus_7033#1 ATTTCAGAATGCTGTACCGGATACGGTTAGTACAACGTACGGTGTATATATATGCGCTAT 504 ************************************************************ consensus_7033#0 GTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTTATCATA 1668 consensus_7033#1 GTATAGTAATTGAAGTACTCTATGTGGGTAATGGAGAGAGGTGGTTATGTCCTAAAAAAA 564 ***************************************************** * * * consensus_7033#0 AAAAA 1673 consensus_7033#1 AAA-- 567 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||