These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [TTCCTTTTTTTTTTTTTTTTTTT-----AAAACTACCATAGGCTACATCCTAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAAACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATAAACACTGTGTAAGAGTTCACATCTGGACAAATCCCCTTCCGGTGCATCTCCTCCCACACCGCACAACCCATCATGTAGTTCCTCCCGCCAAGGAAATATGACTTCATCATCATGTTGTATGTATGGATCGTAGGCTCAAGTCCCTTCTTTATCATCTTTTTATATATTCTTGCCGCATCATCTGGCATATTCCTATTCGTAAGTAGCTTAATGAGAG] [+] EMBL CB648057 [ TCCTTTTTTTTTTTTTTTTTTT AAAACTACCATAGGCTACATCCTAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAAACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATAAACACTGTGTAAGAGTTCACATCTGGACAAATCCCCTTCCGGTGCATCTCCTCCCACACCGCACAACCCATCATGTAGTTCCTCCCGCCAAGGAAATATGACTTCATCATCATGTTGTATGTATGGATCGTAGGCTCAAGTCCCTTCTTTATCATCTTTTTATATATTCTTGCCGCATCATCTGGCATATTCCTATTCGTAAGTAGCTTAATGAGAG] [+] EMBL CA761582 [ttttTTTTTTTTTTTTTTTTTTTAAAAAAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAATTTGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTTTGATTAGGGACATTCCCCTTGTCTCGgcctct ] consensusID : consensus_7039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 526 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA] [+] EMBL CA762296 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTT ] [+] EMBL CB638051 [ CGTTACACATGACTGAACTAAAATAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7039#0 -----------TTCCTTTTTTTTTTTTTTTTTT-------------------------TA 24 consensus_7039#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATA 60 ** ****************** ** consensus_7039#0 AAACTACCATAGGCTACATCCTAATTAACTGAATCATTTTGTTCACACATGAAAACACAC 84 consensus_7039#1 AAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACAC 120 ******************** *************************************** consensus_7039#0 TAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAA 144 consensus_7039#1 TAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAA 180 ********************************************* ************** consensus_7039#0 AGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAA 204 consensus_7039#1 AGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAA 240 ************************************************************ consensus_7039#0 ATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTT 264 consensus_7039#1 ATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTT 300 ************ *********************************************** consensus_7039#0 TTTCATTCTCTCTGCCCACTGGTGGAACACATTAAACGCATCAAATTTACCTGTAAACTT 324 consensus_7039#1 TTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTT 360 ********************************** ************************* consensus_7039#0 CACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGC 384 consensus_7039#1 CACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGC 420 ************************************************************ consensus_7039#0 AAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTA 444 consensus_7039#1 AAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTA 480 ************************************************************ consensus_7039#0 TTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATAAACACTGTGTAAGA 504 consensus_7039#1 TTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA-------------- 526 ********************************************** consensus_7039#0 GTTCACATCTGGACAAATCCCCTTCCGGTGCATCTCCTCCCACACCGCACAACCCATCAT 564 consensus_7039#1 ------------------------------------------------------------ consensus_7039#0 GTAGTTCCTCCCGCCAAGGAAATATGACTTCATCATCATGTTGTATGTATGGATCGTAGG 624 consensus_7039#1 ------------------------------------------------------------ consensus_7039#0 CTCAAGTCCCTTCTTTATCATCTTTTTATATATTCTTGCCGCATCATCTGGCATATTCCT 684 consensus_7039#1 ------------------------------------------------------------ consensus_7039#0 ATTCGTAAGTAGCTTAATGAGAG 707 consensus_7039#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||