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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1585 fasta sequence
[GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATA-GGGGAGAGGGCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCGGATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACCCAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTGGACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAAGATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGATATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAGCAATATATATGGACTACGCAATTGC]
[+] EMBL AK058435 [GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAGAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATA GGGGAGAGGGCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCGGATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACCCAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTGGACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAAGATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGATATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGTCATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAACTGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAGTGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTATCGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCAATGTTGATTGAAATTTGCAGCATGCCATACATTCCACATATAATATATAATGCTCTAATTACATGCAGTTCTGCATTCCATGTATACACCATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGGCTGTGCCTAAATGTTATCTTTTCGCATGAGCATAGACCATGTGGTTGTGCCTAAATTATCTTTTCACGTGAGCAATATATATGGACTACGCAATTGC]
[+] EMBL CB641200 [ CAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGGAGAAGGCGTATGCGTACGACGCGGGCTGCA ]
[+] EMBL CB641176 [ CAGCTCCTCCTGCGCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCGAATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGCTGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGACCCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCGGAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCAAGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATGCAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCAAGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCCGTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGCAGCACGGGGGCGACGACGACGACA ]
consensusID : consensus_7051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAATTGCTGANNNNNNTCNNNATAGAT]
[+] EMBL CF196701 [TAATGAGTGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTATCATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGTGAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTATGCAACATATTTGCATTGCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAGACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGCATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTTCCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCATTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAATTGCTGANNNNNNTCNNNATAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7051#0 GTTTAAGCTGGCCATACATGCATCCATCATCCATGGCTGGGATATCGCAGCTCCTCCTGC 60
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GCGAGTCCACCATCACCATCACCATCACCACCACCACTAATATTCCCGGTGCCGGCGTCG 120
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 AATTGCCCAGACAAGTGCGGCAACGTATCCATCCCCTACCCGTTCGGCATCGGCAGAGGC 180
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 TGCTACCTCGACCTGCCGGGCTCCGGCAGCTTCAGCATCACCTGCAACCACAAGACGGAC 240
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 CCTCCCCAACCCTACACCGCCGATGCCCTCTTGGTCCTGAACATAACGCTGGAGACAGCG 300
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GAAATGTTCGTCGTCTCGGCTGGCGCCCTCGCCGTGGTCAAGTACCCATCAGTAAGAGCA 360
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 AGAAGTGCCATCACGAGCAAATTTATCACTACTACTCAACAAGAAGAAGAACATTCTATG 420
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 CAAGTAAAAGTAACTGTAGGAATGCCTGTCACCCAACAAGTAAACATGACATTCTTACCA 480
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 AGCGGATACACCTTGAGCGCACCGTACCGGCTTTCCCCGACGGGCAACATGTTCACGGCC 540
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GTGGGGTGCGTCACCATGGCGAAGTTGTACGGCAGCGTAAAGAACAGCAGCAGCAGCAGC 600
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 AGCACGGGGGCGACGACGACGACAGCAGCAGCAGCAGGAGGGCAAATGATAGGGGAGAGG 660
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GCGTATGCGTACGACGCGGGCTGCATCACCTACTGCCCGAGCCTGAGCGACGCCGCGGCG 720
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GATGGGGCGCCGTGCAAGGACCTCGGCTGCTGCGAGTCGCCCATCACGCCAGGCCTCACC 780
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 CAGTTCGCCGTAGGATGGGGGCGATGGCCAGGTGCATCCGACGACGACTACGGCGAGTTG 840
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GACCCCGAACAGTACTACCAGTATGCCTTTGTGGCCCAGGACTGGTATACGTTCAAACAA 900
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 GATCATCTTACTCACTGGGACATAGACAACATCAGTGTTCCTTTCGTTCTTCACTGGGAT 960
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 ATCAAGGATGGACCTGCATGCCGACCAGAGACAAATTATGATAGTCCCTTCGGCGCATGT 1020
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 CATAGCAACCACAGCAAATGCGCCAATGTCACCAGTGGTTTGGATGGCTATTTTTGCAAC 1080
consensus_7051#1 ------------------------------------------------------------
consensus_7051#0 TGCTCCGAGGGATACATTGGCAATCCGTACATACCAGATGGATGCAAAGATGTTAATGAG 1140
consensus_7051#1 -----------------------------------------------------TAATGAG 7
*******
consensus_7051#0 TGTGAAAACAATTCTATTTGTGGTGCTGGGTCCACATGCAAGAATACAGAAGGTAGCTAT 1200
consensus_7051#1 TGTGAAAACAAATCGATTTGTGGTGCTGGGTCCAGATGCAAGAATACTGAAGGTAGCTAT 67
*********** ** ******************* ************ ************
consensus_7051#0 CGTTGTGACTGCAATTTCGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT 1260
consensus_7051#1 CATTGTGACTGCAATTTTGGCCAAAGACGTGACAATAGTTCTGATAACATGGGTAATTGT 127
* *************** ******************************************
consensus_7051#0 GAACCCATATTTTCCAGAGCTGCCATAGCAGTCATAGGTGAGGTTCAATACATGAATGCA 1320
consensus_7051#1 GAACCGATATTTTCCAGAGCTGCCATAGCAGTCATAGATGTA-TGCAACATATTTGCATT 186
***** ******************************* ** * *** * **
consensus_7051#0 ATGTTGATTGAAATTTGCAGCATGCCAT------------ACAT-----TCCACATATAA 1363
consensus_7051#1 GCACTACATTCAACTTGAAGCTCAACATTGAAGTGTGAAAACATAATTATTTCCAGATAG 246
* * ** *** *** *** **** * ** ***
consensus_7051#0 TATATAATGCTCTAATTACATGCAGTTCT---GCATTCCATGTATACACCATAT--TTGC 1418
consensus_7051#1 ACCATGTGGCTGTGACTAAATTATCTTTTCGCGCGAGCAATATATGGACTACACAATTGC 306
** *** * * ** ** ** * ** * ** *** ** * * ****
consensus_7051#0 ATTGCACTACAT---TCAACTT-GAAGCTCAACATTGAA-GTGTGAAAACATAATTATTT 1473
consensus_7051#1 ATGAATATGTATAAGTTACCTTTGCAGTATTACATGGTTTATATATTAACTATTTTGTTT 366
** * ** * * *** * ** **** * * * *** ** ***
consensus_7051#0 CCAGATAGACCATGGCTGTG--CCTAAATGTTATCTTT----TCGCATGAGCATAGACCA 1527
consensus_7051#1 CCCTTTTGTCCACAGCAACAGTTTTTATCATCGCACTTCTAGTCGTGNNACTAATGTTCA 426
** * * *** ** * * * ** *** * * * **
consensus_7051#0 TGTGGTTG---TGCCTAAA------------TTATCTTTTCACGTGAGC-AATATATATG 1571
consensus_7051#1 TTCTATTGGAGCGNNANAAAAGAAAGCTGAGNNNTTATTTCANNNGANNTGNTGNACAAT 486
* *** * ** * ***** ** * * *
consensus_7051#0 GACTACGCAATTGC--------- 1585
consensus_7051#1 TGCTGANNNNNNTCNNNATAGAT 509
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||