|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2272 fasta sequence
[TCGTCGCGATGGACACGCCATTGCTGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCGCGCCGCGGCACGCGGCGGA-GGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACGTGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCGCGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGGCCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCGTCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACGTCCCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGCCAGCTCGTCTTCCTCTTCAACTGCACCAGCAGCAGCAGGCCGCCGCCGGCAGGGTTCGTCAACGTCACGTGCCCGGGAGCGAAGGCCGTGGTCCGGCTCGACACGAGCTACAACAACACCGCCGCCAGAGTGGTCGCCGGAGGTTGCGACTACGCGGCCGTTCCGGTGGTCGGCGTGCCGGGGGCGAGCCCGACGGACTACCCGCAGCTGCTCCGGGGAGGCTACATGCTGGAGTGGAGGGCGCCCGCCGGCGACTGCATGGCGTGCAATGCCAGCGGCGGCCAGTGTGGCTACGACGCCGACACGGAGGCGTTCGCCTGCATCTGCTCCGACGGCTCATCGCGCCCGGGGATATGTGATGCAAAGAAGTCCGGGAACAAGGTCATCCTGATAGTGTCACTGTCGATCTGTGCGACTGGGTTGGTGCTATTGGCATGCATCGCCACCGTCTACAAGTGTCGCCGACGTATGCAAAATCGTTTCAGTTTTCTGAACGCCATGGACGGTGCAAGCAGAACGGATACTGCAAAGGTGGAGAAGCTGCTGCAGAGTTACGGATCCCTAGCTCCCCGGAGGTTCAGGTACTCGGAGCTGAAGAAGATAACGAAGTCCTTCAGCCAGCGGCTCGGCGAGGGCGGCTACGGCACGGTGTTCAGCGGCACGCTCGCCGACGGCCGCGCCGTCGCCGTCAAGTTCCTCCACCACTCCAAGCCCAACGGCGAGGAGTTCCTCAACGAGGTGGTCAGCATTGGCCGGACGAGCCATGTCAACATCGTCTCCCTGCTCGGCTTCTGCCTCGAGGGCTCCAAGCGAGCCCTCGTCTACGAGTACATGCCCAATGGCTCGCTGGACAAGTACATCTACTCGACGTCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGCGGAGGCGACGGCGAGCCCTGACAGGGATGTTCTGGGGTGGAAGGTGCTGCAGGAGATCGCCGTCGGCGTGGCGCGGGGGCTGGAGTACCTGCACGACGGGTGCAACACGCGGATCATCCACTTCGACATCAAGCCGCACAACGTGCTCCTCGACGAGGGATTCCGGCCCAAGATCGCCGACTTCGGGATGGCGAAGCTGTGCAACCCAAAGGAGAGCATCCTGTCGATGGCGGACACGAGGGGGACGATAGGGTTCATCGCGCCGGAGGTGTTCTCCCGCGGGTTCGGCGACATCTCGACCAAGTCCGACGTGTACAGCTACGGGATGCTGCTGCTGGAGATGGTCGGCGGCGGGAGCAACGTCAAGGCCTACGCCGAGAAGGGCGCCAGCGGCACGTTCTTCCCGCTCTGGGTCTACGACCACCTGCTCGAGGACGGCGGCGTGCTGCAGAGCGTCGCCGCCGCCGCCGCCGCCACGGCCGGCGGCGGCGCCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCCTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAATCATGTACTACTCCTATTCAGTTTTAGTTTAACTT]
[+] EMBL AK110482 [TCGTCGCGATGGACACGCCATTGCTGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCGCGCCGCGGCACGCGGCGGA GGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACGTGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCGCGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGGCCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCGTCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACGTCCCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGCCAGCTCGTCTTCCTCTTCAACTGCACCAGCAGCAGCAGGCCGCCGCCGGCAGGGTTCGTCAACGTCACGTGCCCGGGAGCGAAGGCCGTGGTCCGGCTCGACACGAGCTACAACAACACCGCCGCCAGAGTGGTCGCCGGAGGTTGCGACTACGCGGCCGTTCCGGTGGTCGGCGTGCCGGGGGCGAGCCCGACGGACTACCCGCAGCTGCTCCGGGGAGGCTACATGCTGGAGTGGAGGGCGCCCGCCGGCGACTGCATGGCGTGCAATGCCAGCGGCGGCCAGTGTGGCTACGACGCCGACACGGAGGCGTTCGCCTGCATCTGCTCCGACGGCTCATCGCGCCCGGGGATATGTGATGCAAAGAAGTCCGGGAACAAGGTCATCCTGATAGTGTCACTGTCGATCTGTGCGACTGGGTTGGTGCTATTGGCATGCATCGCCACCGTCTACAAGTGTCGCCGACGTATGCAAAATCGTTTCAGTTTTCTGAACGCCATGGACGGTGCAAGCAGAACGGATACTGCAAAGGTGGAGAAGCTGCTGCAGAGTTACGGATCCCTAGCTCCCCGGAGGTTCAGGTACTCGGAGCTGAAGAAGATAACGAAGTCCTTCAGCCAGCGGCTCGGCGAGGGCGGCTACGGCACGGTGTTCAGCGGCACGCTCGCCGACGGCCGCGCCGTCGCCGTCAAGTTCCTCCACCACTCCAAGCCCAACGGCGAGGAGTTCCTCAACGAGGTGGTCAGCATTGGCCGGACGAGCCATGTCAACATCGTCTCCCTGCTCGGCTTCTGCCTCGAGGGCTCCAAGCGAGCCCTCGTCTACGAGTACATGCCCAATGGCTCGCTGGACAAGTACATCTACTCGACGTCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGCGGAGGCGACGGCGAGCCCTGACAGGGATGTTCTGGGGTGGAAGGTGCTGCAGGAGATCGCCGTCGGCGTGGCGCGGGGGCTGGAGTACCTGCACGACGGGTGCAACACGCGGATCATCCACTTCGACATCAAGCCGCACAACGTGCTCCTCGACGAGGGATTCCGGCCCAAGATCGCCGACTTCGGGATGGCGAAGCTGTGCAACCCAAAGGAGAGCATCCTGTCGATGGCGGACACGAGGGGGACGATAGGGTTCATCGCGCCGGAGGTGTTCTCCCGCGGGTTCGGCGACATCTCGACCAAGTCCGACGTGTACAGCTACGGGATGCTGCTGCTGGAGATGGTCGGCGGCGGGAGCAACGTCAAGGCCTACGCCGAGAAGGGCGCCAGCGGCACGTTCTTCCCGCTCTGGGTCTACGACCACCTGCTCGAGGACGGCGGCGTGCTGCAGAGCGTCGCCGCCGCCGCCGCCGCCACGGCCGGCGGCGGCGCCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCCTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAATCATGTACTACTCCTATTCAGTTTTAGTTTAACTT]
[+] EMBL AU068105 [ TGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCGCGCCGCGGCACG GGANGGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACGTGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCGCGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGGCCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCGTCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACGTCTCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGC ]
consensusID : consensus_7054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence
[CTNCTCGAGGACNGCCGGCGTGNTGCAGAGCGTTNGCCGCCGCCGCCGCCGCCACGGCCGGCGGCTTTNCTCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCNTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAAC-AAC-AAAATTAGAC-GTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA]
[+] EMBL AU068106 [CTNCTCGAGGACNGCCGGCGTGNTGCAGAGCGTTNGCCGCCGCCGCCGCCGCCACGGCCGGCGGCTTTNCTCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGTGGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGGAGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCCCGTCGCGGCCGTCGAGCTACCCCTCNTCTGCCTCGGATTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAACTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAAC AAC AAAATTAGAC GTTATTACTGTTTGAATCATTAATTCGTTCTCTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA]
[+] EMBL AU166487 [ AGAAAAGCGTCCACGAGCTTTCCATGCCGCCGCGGCCGTACCACTNGAACTCGTCGTCCCCGTNGCGGCCGTCGAGCTACCCCTCCTNTGCCTCGGNTTTCACGCAGCGATCAAGGTTATCAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATNACTATACTTGAAGCNGACAACTGGCTAGTAGACTGTNAATTAAANAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGAGCAGATTAGCAAGAACTAACTAAAATTAGACTGTTATTACTGTTTGAATCATTAATTCGTTNTCTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7054#0 TCGTCGCGATGGACACGCCATTGCTGCTGCTGCTTCCCTTCCTGGCGGCATGTCTGCTCG 60
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CGCCGCGGCACGCGGCGGAGGCGGCCGTCACGAGCTGCGCGCCGAGGAGGTGCGGGAACG 120
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TGACCATCGCCTACCCGTTCTGGCTGCCGGACTCATCGCCGCCGCCGTCGTCGTCGTCCG 180
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CGCCGTGCGGCCCCGCGGCGTTCCAGGTGAACTGCGACAACGGCAGCCGCGCGTCGCTGG 240
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CCCGCTCCTTCCGCAGCGGGTACAAGATCCTCGGCGTGTCGTACGCCAACCGCACCGTCG 300
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TCGTCGCCAACGACAACGTCCAGACCGACGCCAGCGGCTGCCCGGTGCCCAAGATCGACG 360
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TCCCCGCCAGCCTCACCCTCGCGCCGTTCACCGCCAGCCCGGCCAACAGCCAGCTCGTCT 420
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TCCTCTTCAACTGCACCAGCAGCAGCAGGCCGCCGCCGGCAGGGTTCGTCAACGTCACGT 480
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 GCCCGGGAGCGAAGGCCGTGGTCCGGCTCGACACGAGCTACAACAACACCGCCGCCAGAG 540
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TGGTCGCCGGAGGTTGCGACTACGCGGCCGTTCCGGTGGTCGGCGTGCCGGGGGCGAGCC 600
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CGACGGACTACCCGCAGCTGCTCCGGGGAGGCTACATGCTGGAGTGGAGGGCGCCCGCCG 660
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 GCGACTGCATGGCGTGCAATGCCAGCGGCGGCCAGTGTGGCTACGACGCCGACACGGAGG 720
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CGTTCGCCTGCATCTGCTCCGACGGCTCATCGCGCCCGGGGATATGTGATGCAAAGAAGT 780
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CCGGGAACAAGGTCATCCTGATAGTGTCACTGTCGATCTGTGCGACTGGGTTGGTGCTAT 840
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TGGCATGCATCGCCACCGTCTACAAGTGTCGCCGACGTATGCAAAATCGTTTCAGTTTTC 900
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TGAACGCCATGGACGGTGCAAGCAGAACGGATACTGCAAAGGTGGAGAAGCTGCTGCAGA 960
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 GTTACGGATCCCTAGCTCCCCGGAGGTTCAGGTACTCGGAGCTGAAGAAGATAACGAAGT 1020
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CCTTCAGCCAGCGGCTCGGCGAGGGCGGCTACGGCACGGTGTTCAGCGGCACGCTCGCCG 1080
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 ACGGCCGCGCCGTCGCCGTCAAGTTCCTCCACCACTCCAAGCCCAACGGCGAGGAGTTCC 1140
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TCAACGAGGTGGTCAGCATTGGCCGGACGAGCCATGTCAACATCGTCTCCCTGCTCGGCT 1200
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TCTGCCTCGAGGGCTCCAAGCGAGCCCTCGTCTACGAGTACATGCCCAATGGCTCGCTGG 1260
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 ACAAGTACATCTACTCGACGTCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGCGGAGGCGA 1320
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CGGCGAGCCCTGACAGGGATGTTCTGGGGTGGAAGGTGCTGCAGGAGATCGCCGTCGGCG 1380
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TGGCGCGGGGGCTGGAGTACCTGCACGACGGGTGCAACACGCGGATCATCCACTTCGACA 1440
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TCAAGCCGCACAACGTGCTCCTCGACGAGGGATTCCGGCCCAAGATCGCCGACTTCGGGA 1500
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TGGCGAAGCTGTGCAACCCAAAGGAGAGCATCCTGTCGATGGCGGACACGAGGGGGACGA 1560
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 TAGGGTTCATCGCGCCGGAGGTGTTCTCCCGCGGGTTCGGCGACATCTCGACCAAGTCCG 1620
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 ACGTGTACAGCTACGGGATGCTGCTGCTGGAGATGGTCGGCGGCGGGAGCAACGTCAAGG 1680
consensus_7054#1 ------------------------------------------------------------
consensus_7054#0 CCTACGCCGAGAAGGGCGCCAGCGGCACGTTCTTCCCGCTCTGGGTCTACGACCACCTGC 1740
consensus_7054#1 --------------------------------------------------------CTNC 4
** *
consensus_7054#0 TCGAGGACGGC-GGCGTGCTGCAGAGCGT-CGCCGCCGCCGCCGCCGCCACGGCCGGCGG 1798
consensus_7054#1 TCGAGGACNGCCGGCGTGNTGCAGAGCGTTNGCCGCCGCCGCCGCCGCCACGGCCGGCGG 64
******** ** ****** ********** *****************************
consensus_7054#0 CGGCGC-CGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGT 1857
consensus_7054#1 CTTTNCTCGGATCACCGGGAGGCGAGGAGATCGCGAGGAAGATGGCGCTGATCGGGCTGT 124
* * *****************************************************
consensus_7054#0 GGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGG 1917
consensus_7054#1 GGTGCATACAGACCGTGCCGGCGAACAGGCCGTCGATGGGCAAGGTGCTGGAGATGCTGG 184
************************************************************
consensus_7054#0 AGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCC 1977
consensus_7054#1 AGAGAAGCGTCCACGAGCTCGCCATGCCGCCGCGGCCGTACCACTCGAACTCGTCGTCCC 244
************************************************************
consensus_7054#0 CGTCGCGGCCGTCGAGCTACCCCTCCTCTGCCTCGGATTTCACGCAGCGATCAAGGTTAT 2037
consensus_7054#1 CGTCGCGGCCGTCGAGCTACCCCTCNTCTGCCTCGGATTTCACGCAGCGATCAAGGTTAT 304
************************* **********************************
consensus_7054#0 CAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAA 2097
consensus_7054#1 CAACACCGGGAAGCACAGCGTGAAAAGTGGCGATGGAATGACTATACTTGAAGCAGACAA 364
************************************************************
consensus_7054#0 CTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGA 2157
consensus_7054#1 CTGGCTAGTAGACTGTAAATTAAAGAAAACCAGAGTGGGAGCTTTGGTTTTGTATGTAGA 424
************************************************************
consensus_7054#0 GCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCT 2217
consensus_7054#1 GCAGATTAGCAAGAACAACAAAATTAGACGTTATTACTGTTTGAATCATTAATTCGTTCT 484
************************************************************
consensus_7054#0 CTTATGGTTTTCTGTGGAAATCATGTACTACTCCTATTCAGTTTTAGTTTAACTT 2272
consensus_7054#1 CTTATGGTTTTCTGTGGAAAAAAAAAAAAAAA----------------------- 516
******************** * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||