These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2071 fasta sequence [GACAGGCATAGGCATCTGGCATACTTATAATATTAATCTTTTGTCCTGAGCAGGTTATGGTCCTGGACCTTCCTCTTGATATCCAAGCCGTTTCAGCGAACAAATTTGTTGACAAAGTATTAACCTTTAAGCCAAGGCTTATTATAATAGTTTCGCCCGCAGATATTGAAAGATTGGATTGCAAGGAGGAGCCCTATCATTTGATATGGGAATATAATCAGCACATCTTTGGGAAGCCATGGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTCCTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACCAGACATAGGATAATATGAGGATAGCTGGAAAACATGGCCATTTAAATGTTGGGCACAACGCACATAGTGTCATGTCGAATGATTCTTCTGTGGACAAAGGTGCTAAGGGGGATAACGAGATCTTCACAGTTGGAAAAGAAGACACTAGCGAGAGAGAACAAACATCTGAGCACTGTTCAGGAGAACGATTGATAATTCCCAATGTAGTTACTTTTCATGCAAATCAAGAGCAGAATGATGAGCTACAAAGCTTGTATAAGGAGAAACATGCTAATGGAAGTGGAGGCGGAAATAACTTGACATCAGGAAAAGAGAGTGATGTGCATCGGGGAGAGAATGCATGTGGGCATAACTCTGCAGCACGTCAAAAGACAGAGATCTCGAAGAGAGAAAACAGAATGACGGATAGTACACATGAAGAGAACATGAGATCAGGAAAAGAGAAGATTCCCAGGGATGGCAGCAACAAGGGGACAGTGAAGCCAGATCTTGTTGATGGACTACCTCCAGATAAGCATGTAGATGTTGCATTTGTGCACAAGACAACTACCAACAGAGTAGATACTCAGCAAGAATGTGGATACAATGTGGCTGTAGATGTTGATGACAATTATGCTCTTCAACATGAGCCAAAGAGTCCTCACGGCAATGATAATCTCAGAGGAACTGAAATGGATACTTCAGGTGACAATTCAAGAAAAACCAGGGAACAAAAGGAGGTGACTGATGGTAAGAGATTGGACTTGGATAGGAAAAGAGAAGCCGTTCGCATGAAAAACGCGCGAGATGGTCATCATGAAGATGATAGAACTGCTCATCCTCAATGTGTTGACGTCAAAAGTCCTTCGCATAATGATGATCAAAGAGCACGAGGGGCTTCAGTATGCAAGTCCAGAAAGAGGGGGACATCAAATAGAATACTAGAGTCAAGGGATACCGTGAGCGAAAATTCAGCTAGACGCCAGGTACCAGTGGAAAGAAGAAATGGTCATGCTCCATATTCAAGAAGGCCTGATTATAGTGCTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTAAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTACATTCTTAACTACCAATTTAGCCCTACTTTTCATACTTTACTTATTTGAA] [+] EMBL CB637253 [GACAGGCATAGGCATCTGGCATACTTATAATATTAATCTTTTGTCCTGAGCAGGTTATGGTCCTGGACCTTCCTCTTGATATCCAAGCCGTTTCAGCGAACAAATTTGTTGACAAAGTATTAACCTTTAAGCCAAGGCTTATTATAATAGTTTCGCCCGCAGATATTGAAAGATTGGATTGCAAGGAGGAGCCCTATCATTTGATATGGGAATATAATCAGCACATCTTTGGGAAGCCATGGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTCCTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACCAGACATAGGATAATATGAGGATAGCTGGAAAACATGGCCATTTAAATGTTGGGCACAACGCACATAGTGTCATGTCGAATGATTC ] [+] EMBL AK064536 [ GAATATAATCAGCACATCTTTGGGAAGCCATTGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTCCTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACAAGACAGAGGAGAATATGAGGATAGCTGGAAAACATGGCCATTTAAATGTTGGGCACAAGGCACATAGTGTCATGTTGAAGGATTCTTCTGTGGACAAAGGTGCTAAGGGGGATAACGAGATCTTCACAGTTGGAAAAGAAGACACTAGCGAGAGAGAACAAACATCTGAGCACTGTTCAGGAGAACGATTGATAATTCCCAATGTAGTTACTTTTCATGCAAATCAAGAGCAGAATGATGAGCTACAAAGCTTGTATAAGGAGAAACATGCTAATGGAAGTGGAGGCGGAAATAACTTGACATCAGGAAAAGAGAGTGATGTGCATCGGGGAGAGAATGCATGTGGGCATAACTCTGCAGCACGTCAAAAGACAGAGATCTCGAAGAGAGAAAACAGAATGACGGATAGTACACATGAAGAGAACATGAGATCAGGAAAAGAGAAGATTCCCAGGGATGGCAGCAACAAGGGGACAGTGAAGCCAGATCTTGTTGATGGACTACCTCCAGATAAGCATGTAGATGTTGCATTTGTGCACAAGACAACTACCAACAGAGTAGATACTCAGCAAGAATGTGGATACAATGTGGCTGTAGATGTTGATGACAATTATGCTCTTCAACATGAGCCAAAGAGTCCTCACGGCAATGATAATCTCAGAGGAACTGAAATGGATACTTCAGGTGACAATTCAAGAAAAACCAGGGAACAAAAGGAGGTGACTGATGGTAAGAGATTGGACTTGGATAGGAAAAGAGAAGCCGTTCGCATGAAAAACGCGCGAGATGGTCATCATGAAGATGATAGAACTGCTCATCCTCAATGTGTTGACGTCAAAAGTCCTTCGCATAATGATGATCAAAGAGCACGAGGGGCTTCAGTATGCAAGTCCAGAAAGAGGGGGACATCAAATAGAATACTAGAGTCAAGGGATACCGTGAGCGAAAATTCAGCTAGACGCCAGGTACCAGTGGAAAGAAGAAATGGTCATGCTCCATATTCAAGAAGGCCTGATTATAGTGCTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTAAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTACATTCTTAACTACCAATTTAGCCCTACTTTTCATACTTTACTTATTTGAA] consensusID : consensus_7064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [CTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTGAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA] [-] EMBL CA761784 [CTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTGAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA] [-] EMBL CA761661 [CTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTGAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7064#0 GACAGGCATAGGCATCTGGCATACTTATAATATTAATCTTTTGTCCTGAGCAGGTTATGG 60 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 TCCTGGACCTTCCTCTTGATATCCAAGCCGTTTCAGCGAACAAATTTGTTGACAAAGTAT 120 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 TAACCTTTAAGCCAAGGCTTATTATAATAGTTTCGCCCGCAGATATTGAAAGATTGGATT 180 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GCAAGGAGGAGCCCTATCATTTGATATGGGAATATAATCAGCACATCTTTGGGAAGCCAT 240 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTC 300 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 CTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACCAGACATAGGATAATATGAGGATAGCTG 360 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GAAAACATGGCCATTTAAATGTTGGGCACAACGCACATAGTGTCATGTCGAATGATTCTT 420 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 CTGTGGACAAAGGTGCTAAGGGGGATAACGAGATCTTCACAGTTGGAAAAGAAGACACTA 480 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GCGAGAGAGAACAAACATCTGAGCACTGTTCAGGAGAACGATTGATAATTCCCAATGTAG 540 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 TTACTTTTCATGCAAATCAAGAGCAGAATGATGAGCTACAAAGCTTGTATAAGGAGAAAC 600 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 ATGCTAATGGAAGTGGAGGCGGAAATAACTTGACATCAGGAAAAGAGAGTGATGTGCATC 660 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GGGGAGAGAATGCATGTGGGCATAACTCTGCAGCACGTCAAAAGACAGAGATCTCGAAGA 720 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GAGAAAACAGAATGACGGATAGTACACATGAAGAGAACATGAGATCAGGAAAAGAGAAGA 780 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 TTCCCAGGGATGGCAGCAACAAGGGGACAGTGAAGCCAGATCTTGTTGATGGACTACCTC 840 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 CAGATAAGCATGTAGATGTTGCATTTGTGCACAAGACAACTACCAACAGAGTAGATACTC 900 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 AGCAAGAATGTGGATACAATGTGGCTGTAGATGTTGATGACAATTATGCTCTTCAACATG 960 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 AGCCAAAGAGTCCTCACGGCAATGATAATCTCAGAGGAACTGAAATGGATACTTCAGGTG 1020 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 ACAATTCAAGAAAAACCAGGGAACAAAAGGAGGTGACTGATGGTAAGAGATTGGACTTGG 1080 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 ATAGGAAAAGAGAAGCCGTTCGCATGAAAAACGCGCGAGATGGTCATCATGAAGATGATA 1140 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GAACTGCTCATCCTCAATGTGTTGACGTCAAAAGTCCTTCGCATAATGATGATCAAAGAG 1200 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 CACGAGGGGCTTCAGTATGCAAGTCCAGAAAGAGGGGGACATCAAATAGAATACTAGAGT 1260 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 CAAGGGATACCGTGAGCGAAAATTCAGCTAGACGCCAGGTACCAGTGGAAAGAAGAAATG 1320 consensus_7064#1 ------------------------------------------------------------ consensus_7064#0 GTCATGCTCCATATTCAAGAAGGCCTGATTATAGTGCTACTGCAAGGCGTGGGTCCCCTT 1380 consensus_7064#1 ------------------------------------CTACTGCAAGGCGTGGGTCCCCTT 24 ************************ consensus_7064#0 CTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAG 1440 consensus_7064#1 CTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAG 84 ************************************************************ consensus_7064#0 TTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGT 1500 consensus_7064#1 TTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGT 144 ************************************************************ consensus_7064#0 ATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTG 1560 consensus_7064#1 ATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTG 204 ************************************************************ consensus_7064#0 ATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTG 1620 consensus_7064#1 ATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTG 264 ************************************************************ consensus_7064#0 AGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATT 1680 consensus_7064#1 AGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATT 324 ************************************************************ consensus_7064#0 ACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAG 1740 consensus_7064#1 ACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAG 384 ************************************************************ consensus_7064#0 ATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTAC 1800 consensus_7064#1 ATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTAC 444 ************************************************************ consensus_7064#0 AAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGT 1860 consensus_7064#1 AAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGT 504 ************************************************************ consensus_7064#0 AGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTA 1920 consensus_7064#1 AGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTG 564 *********************************************************** consensus_7064#0 AAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGA 1980 consensus_7064#1 AAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGA 624 ************************************************************ consensus_7064#0 TCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTACATTCTTAACTACCAATTT 2040 consensus_7064#1 TCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA------ 678 **************************************** ** ** * consensus_7064#0 AGCCCTACTTTTCATACTTTACTTATTTGAA 2071 consensus_7064#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||