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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence
[CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTTGTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGA-CCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTAGCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCCCTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA]
[+] EMBL OSS10821A [CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTTGTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGA CCCTGAAGCCTCCC ]
[+] EMBL AU095758 [ cCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTAGCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCCCTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA]
consensusID : consensus_7066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAACCTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTAGCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGGCGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA]
[+] EMBL BM420632 [AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAACCTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTAGCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGGCGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA]
consensusID : consensus_7066#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA]
[+] EMBL AU166948 [ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7066#0 CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTT 60
consensus_7066#2 ------------------------------------------------------------
consensus_7066#1 ------------------------------------------------------------
consensus_7066#0 GTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCA 120
consensus_7066#2 ------------------------------------------------------------
consensus_7066#1 ------------------------------------------------------------
consensus_7066#0 ATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGG 180
consensus_7066#2 ------------------------------------------------------------
consensus_7066#1 ------------------------------------------------------------
consensus_7066#0 TGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACA 240
consensus_7066#2 ------------------------------------------------------------
consensus_7066#1 ------------------------------------------------------------
consensus_7066#0 GGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGC 300
consensus_7066#2 ------------------------------------------------------------
consensus_7066#1 --------AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGG 52
consensus_7066#0 GGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCTGAAGCCTCCC 360
consensus_7066#2 ------------------------------------------------------------
consensus_7066#1 TCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCC 112
consensus_7066#0 TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGC- 419
consensus_7066#2 --------------------------------------------ATGAAACCCCTTGGCC 16
consensus_7066#1 TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGC- 171
* * ********
consensus_7066#0 -AGTGAAGGA--GGTAGAGGGAC--AAGCAGTT-GAGTGAGAT---GTTTGATTTCTG-- 468
consensus_7066#2 AAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTG 76
consensus_7066#1 -AGTGAAGGA--GGTAGAGGGAC--AAGCAGTT-GAGTGAGAT---GTATGATTTCTG-- 220
******** ********* ******** **** ** ******
consensus_7066#0 -CCATG-TACTGTAGC-AGGCT-AGAACCTA--CATGGTGGG-CATTAC-ACTTCT--GT 518
consensus_7066#2 CCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNT 136
consensus_7066#1 -CCATG------TATGCAGACTAGAACCTACTACATGGTGGG-CATTAC-ACTTCT--GG 269
***** ** ** ** * * ********* ****** ****
consensus_7066#0 TGAACC-TCTTCTTCCCT--GTTCCCTTCTTTT-AGCAGGG-AAAACTG-TACTGAACTT 572
consensus_7066#2 TGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTT 196
consensus_7066#1 TGAACC-ACTTCTTCCCT--GTTCTCTTCTTTT-AGCCAGGGAAAACTG-TACTGAACTT 324
*** ** ********* ** * ******** *** ** ******* **********
consensus_7066#0 GTGATCA-TGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAAC 631
consensus_7066#2 GTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAAC 256
consensus_7066#1 GTGATCA-TGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAA-C 382
******* ************************************************ * *
consensus_7066#0 CAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCC 691
consensus_7066#2 CAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCC 316
consensus_7066#1 CGAATTG----TGGAGATTATGGGT---ATCCCAT-ATCTACACGGCGA--TGGTATTTG 432
* **** ** * * * * *** *** * ** * * * * *
consensus_7066#0 CAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCA 751
consensus_7066#2 CAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA------------------- 357
consensus_7066#1 GACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA-------------------- 472
* ** * * * * * * * * * ***
consensus_7066#0 AAAAAA 757
consensus_7066#2 ------
consensus_7066#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||