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Oryza sativa
cluster # 7066 cluster # 7066       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7066#0 length = 757 sequences # 2  
consensus_7066#1 length = 472 sequences # 1  
consensus_7066#2 length = 357 sequences # 1  

consensusID : consensus_7066#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence
                              [CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTTGTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGA-CCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTAGCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCCCTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA]

[+] EMBL OSS10821A            [CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTTGTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGA CCCTGAAGCCTCCC                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU095758             [                                                                 cCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTAGCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCCCTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA]


>consensus_7066#0 CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTT GTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCA ATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGG TGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACA GGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGC GGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCTGAAGCCTCCC TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCA GTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTA GCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCC CTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAA ACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCA TCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTA GTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA



consensusID : consensus_7066#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence
                              [AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAACCTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTAGCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGGCGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA]

[+] EMBL BM420632             [AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAACCTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTAGCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGGCGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA]


>consensus_7066#1 AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGG ACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATAC GGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGA GGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAAC CTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTA GCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTG GTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGG CGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA



consensusID : consensus_7066#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence
                              [ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA]

[+] EMBL AU166948             [ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA]


>consensus_7066#2 ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNA TGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGC ATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAA AACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTC CGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGT TGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7066#0      CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTT 60
consensus_7066#2      ------------------------------------------------------------
consensus_7066#1      ------------------------------------------------------------
                                                                                  

consensus_7066#0      GTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCA 120
consensus_7066#2      ------------------------------------------------------------
consensus_7066#1      ------------------------------------------------------------
                                                                                  

consensus_7066#0      ATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGG 180
consensus_7066#2      ------------------------------------------------------------
consensus_7066#1      ------------------------------------------------------------
                                                                                  

consensus_7066#0      TGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACA 240
consensus_7066#2      ------------------------------------------------------------
consensus_7066#1      ------------------------------------------------------------
                                                                                  

consensus_7066#0      GGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGC 300
consensus_7066#2      ------------------------------------------------------------
consensus_7066#1      --------AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGG 52
                                                                                  

consensus_7066#0      GGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCTGAAGCCTCCC 360
consensus_7066#2      ------------------------------------------------------------
consensus_7066#1      TCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCC 112
                                                                                  

consensus_7066#0      TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGC- 419
consensus_7066#2      --------------------------------------------ATGAAACCCCTTGGCC 16
consensus_7066#1      TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGC- 171
                                                                   *   * ******** 

consensus_7066#0      -AGTGAAGGA--GGTAGAGGGAC--AAGCAGTT-GAGTGAGAT---GTTTGATTTCTG-- 468
consensus_7066#2      AAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTG 76
consensus_7066#1      -AGTGAAGGA--GGTAGAGGGAC--AAGCAGTT-GAGTGAGAT---GTATGATTTCTG-- 220
                       ********   *********    ******** ****        ** ******     

consensus_7066#0      -CCATG-TACTGTAGC-AGGCT-AGAACCTA--CATGGTGGG-CATTAC-ACTTCT--GT 518
consensus_7066#2      CCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNT 136
consensus_7066#1      -CCATG------TATGCAGACTAGAACCTACTACATGGTGGG-CATTAC-ACTTCT--GG 269
                       *****      **   ** **   * *     ********* ****** ****      

consensus_7066#0      TGAACC-TCTTCTTCCCT--GTTCCCTTCTTTT-AGCAGGG-AAAACTG-TACTGAACTT 572
consensus_7066#2      TGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTT 196
consensus_7066#1      TGAACC-ACTTCTTCCCT--GTTCTCTTCTTTT-AGCCAGGGAAAACTG-TACTGAACTT 324
                      *** **  *********   ** * ******** ***  ** ******* **********

consensus_7066#0      GTGATCA-TGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAAC 631
consensus_7066#2      GTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAAC 256
consensus_7066#1      GTGATCA-TGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAA-C 382
                      ******* ************************************************ * *

consensus_7066#0      CAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCC 691
consensus_7066#2      CAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCC 316
consensus_7066#1      CGAATTG----TGGAGATTATGGGT---ATCCCAT-ATCTACACGGCGA--TGGTATTTG 432
                      * ****       ** * * *   *   *** *** * ** *   *  *  *  *     

consensus_7066#0      CAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCA 751
consensus_7066#2      CAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA------------------- 357
consensus_7066#1      GACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA-------------------- 472
                       *  ** *  *   * *   * * * *       *  ***                    

consensus_7066#0      AAAAAA 757
consensus_7066#2      ------
consensus_7066#1      ------
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)