These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTTGTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGA-CCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTAGCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCCCTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA] [+] EMBL OSS10821A [CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTTGTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGA CCCTGAAGCCTCCC ] [+] EMBL AU095758 [ cCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCAATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGGTGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACAGGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTTTGATTTCTGCCATGTACTGTAGCAGGCTAGAACCTACATGGTGGGCATTACACTTCTGTTGAACCTCTTCTTCCCTGTTCCCTTCTTTTAGCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCAAAAAAA] consensusID : consensus_7066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAACCTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTAGCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGGCGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA] [+] EMBL BM420632 [AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGGTCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCCTTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGCAGTGAAGGAGGTAGAGGGACAAGCAGTTGAGTGAGATGTATGATTTCTGCCATGTATGCAGACTAGAACCTACTACATGGTGGGCATTACACTTCTGGTGAACCACTTCTTCCCTGTTCTCTTCTTTTAGCCAGGGAAAACTGTACTGAACTTGTGATCATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAACCGAATTGTGGAGATTATGGGTATCCCATATCTACACGGCGATGGTATTTGGACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA] consensusID : consensus_7066#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA] [+] EMBL AU166948 [ATGAAACCCCTTGGCCAAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTGCCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNTTGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTTGTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAACCAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCCCAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7066#0 CCGTATTTATCCTGAGGAGATAACACACTGCGCGGCTGGTGTTAGATGGTTCAGATACTT 60 consensus_7066#2 ------------------------------------------------------------ consensus_7066#1 ------------------------------------------------------------ consensus_7066#0 GTGCCTCCGGTCCCGCAATGGTGATCCAACTGCAAGTTCAATTCCGCAGGCTATAACCCA 120 consensus_7066#2 ------------------------------------------------------------ consensus_7066#1 ------------------------------------------------------------ consensus_7066#0 ATGCTCTGAACTCCCACGAGATGGTACCGGTGACATCCACAAGGTCGAAGAGGTGGAAGG 180 consensus_7066#2 ------------------------------------------------------------ consensus_7066#1 ------------------------------------------------------------ consensus_7066#0 TGATGGACCGAAAGCCGAGTTAGCACAAGCCTCCAATGGCGATGACAAGACAGTCCAACA 240 consensus_7066#2 ------------------------------------------------------------ consensus_7066#1 ------------------------------------------------------------ consensus_7066#0 GGTGGAGGATGAACTGGCAAAATGCAAACTAGTCGACATTGGAGATGATGTTGAAGCAGC 300 consensus_7066#2 ------------------------------------------------------------ consensus_7066#1 --------AACTGGCCAAATGCNAACTAGTCGACACTTGGAGATGATGTTGAAGCAGCGG 52 consensus_7066#0 GGTCATTCGGACTTTNCACAGTGTTGTTAGAGAGTATTTCCGGGGACCCTGAAGCCTCCC 360 consensus_7066#2 ------------------------------------------------------------ consensus_7066#1 TCATTCGGACTTTCCACCAGTGTTGTTAGAGAGTATTTCCGGGGACCCCTGAAGCCTCCC 112 consensus_7066#0 TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGC- 419 consensus_7066#2 --------------------------------------------ATGAAACCCCTTGGCC 16 consensus_7066#1 TTCAATACGGAGGCGAGGAAAGCCGCTGGCTTCGAGCCTGCCTGGTATGAACCCTTGGC- 171 * * ******** consensus_7066#0 -AGTGAAGGA--GGTAGAGGGAC--AAGCAGTT-GAGTGAGAT---GTTTGATTTCTG-- 468 consensus_7066#2 AAGTGAAGGNAGGGTAGAGGGGNCAAAGCAGTTTGAGTTGAGNATGGTTTGATTTTCTTG 76 consensus_7066#1 -AGTGAAGGA--GGTAGAGGGAC--AAGCAGTT-GAGTGAGAT---GTATGATTTCTG-- 220 ******** ********* ******** **** ** ****** consensus_7066#0 -CCATG-TACTGTAGC-AGGCT-AGAACCTA--CATGGTGGG-CATTAC-ACTTCT--GT 518 consensus_7066#2 CCCATGGTACTGTAGCCAGGCTTAGAACCCTACCATGGTGGGGCATTACCACTTTCTGNT 136 consensus_7066#1 -CCATG------TATGCAGACTAGAACCTACTACATGGTGGG-CATTAC-ACTTCT--GG 269 ***** ** ** ** * * ********* ****** **** consensus_7066#0 TGAACC-TCTTCTTCCCT--GTTCCCTTCTTTT-AGCAGGG-AAAACTG-TACTGAACTT 572 consensus_7066#2 TGANCCCTCTTCTTCCCCTGGTCCCCTTCTTTTTAGCAGGGGAAAACTGGTACTGAACTT 196 consensus_7066#1 TGAACC-ACTTCTTCCCT--GTTCTCTTCTTTT-AGCCAGGGAAAACTG-TACTGAACTT 324 *** ** ********* ** * ******** *** ** ******* ********** consensus_7066#0 GTGATCA-TGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAAAC 631 consensus_7066#2 GTGATCAATGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCNAAC 256 consensus_7066#1 GTGATCA-TGTTTTGTTTGCCATACGGAAACCGACTGGTCTGTCCGTGGACCAGCCAA-C 382 ******* ************************************************ * * consensus_7066#0 CAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCC 691 consensus_7066#2 CAAATTAAAGACAGAAACTTTACATTTCATCGCATTAGCTTCGTTGTAAATTTCTTCCCC 316 consensus_7066#1 CGAATTG----TGGAGATTATGGGT---ATCCCAT-ATCTACACGGCGA--TGGTATTTG 432 * **** ** * * * * *** *** * ** * * * * * consensus_7066#0 CAACGCAATGGAGGATTCCTTTTCGTTTAGTTGCAGTAAAGCACAATAGAAGTGGTTTCA 751 consensus_7066#2 CAACGCAATGGAGGATTCCTTTTCGTTTAAAAAAAAAAAAA------------------- 357 consensus_7066#1 GACTGCTACCGGATACTTAATGTAGATAGAATAAAAAAAA-------------------- 472 * ** * * * * * * * * * *** consensus_7066#0 AAAAAA 757 consensus_7066#2 ------ consensus_7066#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||