These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCCAAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGGGTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC] [+] EMBL CF276646 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCCAAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGGGTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC] consensusID : consensus_707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCAAAAAACATACTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCCAAATACTTTTTTTACTCCTTCAACCCAT] [+] EMBL CF312275 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCAAAAAACATACTGGTGTCCCACAGGAAACTGTTTCATAAAACTAACATTTTATACGGGCTCGAGGGGCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCCAAATACTTTTTTTACTCCTTCAACCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_707#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGG 60 consensus_707#1 -------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA-- 51 *************************************************** consensus_707#0 GGCAAATCCCACTTTTTTATAAAGCATTCTGGTGTCCCACAGGAAACTGTTTCATAAAAC 120 consensus_707#1 ---------------TTCAAAAAACATACTGGTGTCCCACAGGAAACTGTTTCATAAAAC 96 ** * *** *** ******************************** consensus_707#0 TAACATTTTATACGGGCTCGAGGGGCCTTTAAACCCAACCCAAGTTAACTTTACCCCCCC 180 consensus_707#1 TAACATTTTATACGGGCTCGAGGGGCCTTTAAACCAAACCCAAGTAAACTTCACCCCCCC 156 *********************************** ********* ***** ******** consensus_707#0 AAATTCTTGACAAACAAAGGCTTGGGATAACCAAGCCCATTGGGAGCTCCCCCAAACTGG 240 consensus_707#1 AAATACTTTTTTTACTC---CTTCAACCCAT----------------------------- 184 **** *** ** *** * consensus_707#0 GTGATTACTGACCCCCCCGGGGGGGGACCCCCAGGGGGGGGGGGGAC 287 consensus_707#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||