These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAATCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTTTTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT] [+] EMBL CF301398 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAATCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTTTTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT] consensusID : consensus_708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCCAGGAATTTTTTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCCAAAAAACGTTG] [+] EMBL CF300021 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGGGGGCCCCACAGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCCAGGAATTTTTTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCCAAAAAACGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_708#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_708#1 ----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56 ******************************************************** consensus_708#0 TTTTTTTCTGGGGGACCCCATTTTAAATGCCTTTTTTAAAATCAAAGGGGAACCCCCCAA 120 consensus_708#1 TTTTTTTTT----------------------TTTTTTAAAA------------------- 75 ******* * ********** consensus_708#0 TCCAAAAAAAATTCCCTCCAAATTCCCCCTCAAATTATACAAATCCCCCGGGGGCCCCAC 180 consensus_708#1 ------AAAAATTCCCTCCAAATTCCCCCTCAAATGATACAAATCCCCCGGGGGCCCCAC 129 ***************************** ************************ consensus_708#0 AGGCGTTCAATTTTCCCGGCCGGGGGGTTATTTCAAAAAGGTTTTTGGGCCCGGAATTTT 240 consensus_708#1 AGGCGTTCAATTTTGCCGGCGGGGGGGTCATTTCAAAAAGGGTTTTGGGCCAGGAATTTT 189 ************** ***** ******* ************ ********* ******** consensus_708#0 TTTTTGGGTGGCCCATCGATCGATGTTTTTTTTTAAATCTTCCCCT-------------- 286 consensus_708#1 TTTTTGGGGGGCCCATCGATCGATGATCTTTTTTAAATCTTCCCCTTTTCCAAAAAACGT 249 ******** **************** * ****************** consensus_708#0 -- consensus_708#1 TG 251 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||