These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCAACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTGTTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG] [+] EMBL CB644281 [GTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGGTACGTCCCGTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAAATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTTCATCAACAATTCACTATGTTCATCAGGGTCAGTAATTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTTTGTGCGTGCAAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAATGAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATATACTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGGAGATGGAATATATGTTTAAAATAGAAGAGATGGATCATTCAATCGGCTGAAACTGTTCGTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGATCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATTTTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG] consensusID : consensus_7086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGGTCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACGGAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCAAGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCTGATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTCAAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCATCCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGTGCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAACGTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC] [+] EMBL CB644282 [CCTACTATTATTGAATTCCCAGAGCCAACAAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGAAGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTTGCTATAACAAATTTATATGCCTAGTCTAGAAGCTACTTGAATTGCTGGTCTGCTGGATTAACCATAGGCACCCTCTCAATTCTTACAGGCTGATCGACGCCGTCCACGGAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCAAGTGTTGAGAATGTTACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCCCGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGATCGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATCAATAAACCATGATGCTGATGCAACGTGGTAGCTCTCCTAAAGACAACTGGATGGGTTTTCAGAGCAATAGAGACTCAAGATGCAAACATTATTACTGTGTTTCAAAGCTCTGTCTGCCACTTTTGGATGGCTTCATCCCCACTGAACTGTTGCTGTTGTCCTTAGGTTCTTCATAAATGACAATATGGCATGTTGTGCTACTGCATACAGAAGCAATGAAGCATTTGTCCAAGTCATGGGTGAGGCCCCTATAAACGTTGCATACTTGCATAATGTCAGAGGTTTCATTAATTGAGTAGTTTCAGTACAGAAGAC] consensusID : consensus_7086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATAGTAGGA] [+] EMBL AK062660 [GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCGTCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGGAGGAGGCGGTGCTCCGACGTGGTCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGGGTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGACTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATGATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAGCACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATAGTAGGA] [+] EMBL CF196453 [ GGAACGGCCGCCGGCGCCGCCTCTTCCACCGGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGAATTTTCTCCAACGTATGTAACATTCTCAACACTTGCACTTGTTATCCTCACGATATTCACCAACGTTGTGTTCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCCTGTAAGAATTGACAGGGTGCCTATGGTTAATCCAGCAGACCAGCAATTCAAGTAGCTTCTAGACTAGGCATATAAATTTGTTATAGCAAGAAGTGATATAATATGCTAGTAAAATAGATCATGATTCATGTGTATTCAACCATATCTTCTTTTTGTATTTAACACCCATACGTTCTAAATGAATCATTTTGTTGGCTCTGGGAATTCAATAATtn ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7086#0 -------------------------------------GTCCCGTTCCCGGCGATCGCCG- 22 consensus_7086#2 GCGGCTGTGCGCGGCGGCGAGGATGCATCTCCGCTTCGTCCCGTTCCCGGCGATCGCCG- 59 consensus_7086#1 ----------------------------------------------CCTACTATTATTGA 14 ** * ** * consensus_7086#0 -TCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGG 81 consensus_7086#2 -TCGGCGGAGCGAGCTTGAGATTCCTCGCCGATAACACACGTGCAGTGGGCGGAAGCGGG 118 consensus_7086#1 ATTCCCAGAGCCAAC--AAAATGATTCATTTAGAACGTATGGGTGCTAAATACAAAAAGA 72 * * **** * * * ** ** * *** * * * * ** * consensus_7086#0 AGGAGGCGGTGCTCCGACGTGG-TCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGG 140 consensus_7086#2 AGGAGGCGGTGCTCCGACGTGG-TCGCCTTCTCGTCGTCGGAGAAGGGGCCGGGGCCGGG 177 consensus_7086#1 AGATATGGTTGAATACACATGAATCATGATCTATTTTACTAGCATATCATATCACTTCTT 132 ** * ** ** ** ** *** * * * consensus_7086#0 GTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGA 200 consensus_7086#2 GTCGGGGGAGGAGCGCGAGCCGCGGGCTGAGGAGGCGCTGCGGCGGCTGGCGGAGCTCGA 237 consensus_7086#1 GCTATAACAAATTTATATGCC--TAGTCTAGAAGCTACTTGAATTGCTGGTCT-GCTGGA 189 * * *** * ** ** ** ***** *** ** consensus_7086#0 CTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACC 260 consensus_7086#2 CTCGCAGCTGGAGGGGCTTTCCGAGCCCAGGGAACGGCCGCCGGCGCCGCCTCTTCCACC 297 consensus_7086#1 TT---AACCATAGGCACCCTCTCAATTCTTACAG-GCTGATCGACGCCG-----TCCACG 240 * * * *** * ** * * * * ** ***** ***** consensus_7086#0 GGGTACGTCCC--GTTGGGCTTTTGCCTACCTCGTCCCTCCTCTCATGGGCTCATGGCAA 318 consensus_7086#2 GGACCCTTACATGGACCGAGATATGATAACTGGGCGGGGATCAAAAGATGAACTTCCTGA 357 consensus_7086#1 GAAGGTTTGATGTAAAGATTGAACACAACGTTGGTGAATATCGTGAGGATAACAAGTGCA 300 * * * * * * consensus_7086#0 ATTGCTTTTCCAGTTTACATGTGCGCTGTGTCCATTT-CATCAACAAT--TCACTATGTT 375 consensus_7086#2 ATT--TTCTCCAACGTATGTA-ACATTCTCAACACTTGCACTTGTTATCCTCACGATATT 414 consensus_7086#1 AGTG--TTGAGAATGT-TACATACGTTGGAGAAAATTCAGGAAGTTCATCTTTTGATCCC 357 * * * * * * * * ** * ** consensus_7086#0 CATCAGGGT-CAGTAA-TTGATATCAACTGAAAACTTTTAGTGGTAAACTTACACTAGTT 433 consensus_7086#2 CACCAACGT-T-GTGT-TCAATCTTTACATCAAACCTTCCGTGGACGGCGTCGATCAGCC 471 consensus_7086#1 CGCCCAGTTATCATATCTCGGTCCATGTAAGGGTCTGTTTCAAGCAAATCACAGTTAGAT 417 * * * * * * * * * ** consensus_7086#0 TGTG------CGTGC-AAGCATCTTCGTTTTCTCAAGCTCGTTAACCCAAAAAATCTAAT 486 consensus_7086#2 TGTA------AGAATTGAGAGGGTGCCTATGGTTAATCCAGCAGACC--AGCAATTCAAG 523 consensus_7086#1 CGGAGTCCATCTCACTGTGATGTTAACATTGTTAAGAACAACTGATC--AATAAACCATG 475 * * * * * * * * * ** * consensus_7086#0 GAGATTATGATTGATTAAGTAGTCAAAATTATATGTATAGTGTTCTACTTTTACATA-TA 545 consensus_7086#2 TAGCTTCTA---GACTAGGCATATAAATTTGT---TATAGCAAGAAGTGATATGATA-TG 576 consensus_7086#1 ATGCTGATG--CAACGTGGTAGCT---CTCCTAAAGACAACTGGATGGGTTTTCAGAGCA 530 * * * * * * * * * * * * * consensus_7086#0 CTATTGATCAAAGTTTTAAGATGTTGTCCATAGTTATCCTGCAATGACCTATATATTTGG 605 consensus_7086#2 CTAGTAAAATAGATCATGA-------TTCATGTGTATTCAACCATATCTTCTTTTTGTAT 629 consensus_7086#1 ATAGAGACTCAAGATGCAAAC-----ATTATTACTGTGTTTCAAAGCTCTGTCTGCCACT 585 ** * * * ** * * * * * * * consensus_7086#0 AGATGGAATATATGTTTAAAATAGAAGAGATGGATCATT-CAATCGGC-TGAAACTGTTC 663 consensus_7086#2 TTAGCACCCATACGTTCTAAAT---------GAATCATT-TTGTTGGC-TCTGGGAATTC 678 consensus_7086#1 TTTGGATGGCTTCATCCCCACT---------GAACTGTTGCTGTTGTCCTTAGGTTCTTC 636 * * * * * * ** * * * * *** consensus_7086#0 GTGGAGACCTCAATGCATTATGCAACATACTAGGCTCACTCATACTAACTTTGTCAATGA 723 consensus_7086#2 AATAATAGTAGGA----------------------------------------------- 691 consensus_7086#1 ATAAATGACAATATG---------GCATGTTGTGCTACTGCATACAGAAGCAATGAAGCA 687 * * consensus_7086#0 TCAGATCAAGAGCTTTAAAAGGTCGGCAGGACAGATCTCTCAGCAACAAATATAAATATT 783 consensus_7086#2 ------------------------------------------------------------ consensus_7086#1 TTTGTCCAAGTCATGGGTGAGGCCCCTATAA-ACGTTGCATACTTGCATAATGTCAGAGG 746 consensus_7086#0 TTTTATAAAGTGTTTGGTGGAGATGGATCAGTCCTCTG 821 consensus_7086#2 -------------------------------------- consensus_7086#1 TTTCATTAATTGAGTAGTTTCAGTACAGAAGAC----- 779 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||