These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence [TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGCCATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATC-TTCTAGAGATGGTAGAAG-ATACACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTT-GTCATGGACAAATACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGCGGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCACAACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATTCAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATTT-ATCCNTGNTT--ATT-ATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGACGACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTGTGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAAACTGTGATGGATCAAAAAAAAAAGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA] [+] EMBL BQ908543 [TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGCCATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATC TTCTAGAGATGGTAGAAG ATACACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTT GTCATGGACAAATACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGCGGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCACAACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATTCAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATTT ATCCNTGNTT ATT ATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGACGACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTGTGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAAACTGTGATGGATCAAAAAAAAAA ] [+] EMBL BI802718 [ ggaATGGGGAATCTTTCTAGAGATGGTAGAAGAATACATTGACCGGTGAGGAACTTAGCGACGCTGACAGTGCCCATATTGTTGGTCATGGACAAATACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGCGGGATTCAGTAAGAAGAAAACCTGCATC TTC TACTGACTATAGCCACCGGCC TCCACAACCAACTCCACC TGC TTCACTATCCAAGAAGGAATCATGGGATGTCA TTGAGGATTCAGAGTTTGAGATAC TTGACAGTTAATAACAGAGATCTCTGGGATCTCTCT GGCTATTTGATCC TGTTTTGATTGAT TGTTTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGACGACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTGTGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA] consensusID : consensus_7092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [GGGGACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAGCGGCCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCAGAAGGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACACGAGATCTCTGGGATCTCTCTGGCTATTTA] [+] EMBL BI807487 [GGGGACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAGCGGCCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCAGAAGGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACACGAGATCTCTGGGATCTCTCTGGCTATTTA] consensusID : consensus_7092#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 70 fasta sequence [CCGTAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA] [+] EMBL BM419683 [CCGTAAAGAAAACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTGTACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7092#0 TTTCCCGGGTCTGACCCACGCGTCCCGACGCGTGGGTTGCAAGTCCAAATCTGAGCAAGC 60 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 CATGGATCAGTGGTCCGAAATACCTTCGGATGTGGAATCTTCTAGAGATGGTAGAAGATA 120 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 CACTTAGCGGTGAGGAGCTTAGCGACGCTGACAGTGCCCATATTGTTGTCATGGACAAAT 180 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 ACATGGATTCACTTCTGTCAGATCGGAGGAGCCTCCACTATGCTAGCTCCTCAGTCCGGC 240 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 GGGATTCAGTAAGAAGAAAACCTGCATCGTTCGTACTGACTATAGCCACCGGCCGTCCAC 300 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 AACCAACTCCACCGTGCGTTCACTATCCAAGAAGGAATCATGGGATGTCATTTGAGGATT 360 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 CAGAGTTTGAGATACGTTGACAGTTAATAACAGAGATCTCTGGGATCTCTCTGGGCTATT 420 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ------------------------------------------------------------ consensus_7092#0 TATCCNTGNTTATTATGTTTGTCTCTCTATTCCCTTACCCTTCACCTGCTTGTAAATGAC 480 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 ---------------------------------------------------------GGG 3 consensus_7092#0 GACCTTCAGGTGGTGTCAGTGTTCGTGGGAAAATTTCTCTACCATTATATTATTACAGTG 540 consensus_7092#2 ------------------------------------------------------------ consensus_7092#1 GACTGTACCCTGCAGGTCGTGCCGGGATTTCCGGGTCGACCCACGCGTCCGCCCAAGCGG 63 consensus_7092#0 TGCATATCACTATGTAAGTTGGGTATATCCCCTCATTCCATATGGTGTAACATAAAGAAA 600 consensus_7092#2 -------------------------------------------------CCGTAAAGAAA 11 consensus_7092#1 CCGCTTTCTGACTATACCACCGCCTCCACAACCAACTCCACCTGCGTCACTATCCCAGAA 123 * ** consensus_7092#0 ACTGTGATGGATCAAAAAAAAAAGGTGAGACTATGGGTAAGTCTCCCACTG-TACAAAAA 659 consensus_7092#2 ACTGTGATGGATCACCTGCCAAGGGTGAGACTATGGGTAAGTCTCCCACTG-TACAAAAA 70 consensus_7092#1 GGAATCATGGGATGTCATTGAGGATTCAGAGTTTGAGATACTTGACCGGTGATACACGAG 183 * **** * * *** * ** * * * ** ** **** * consensus_7092#0 -------------------------- consensus_7092#2 -------------------------- consensus_7092#1 ATCTCTGGGATCTCTCTGGCTATTTA 209 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||