These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1516 fasta sequence [GCAGTAAAAAAAGCGCCGCTACCTACACACACAACCGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGGGCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGG-GCGTTCCGGCGACGGTGCTTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCCTCGCTCTCCACCTGCCCAAGCGC-TTCTGCGAGC-TGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACATGGAGGCGTACGCCGCGGCGGCGGGCGTCGCGCCGCGCTTCGGCGCCACCGTCGAGGAGGCCGCGTTCGACGCGGCCGTCGGCGCATGGAGGGTGCGTCTCGACGGCGGGGAGGTGCTCATGGCGCGGTGGCTCGTCGTCGCGACGGGGGAGAACGCCGAGCCGCGGGTGCCGGACTTTCCCGGCATGCAGAAGTTCGCCGGGTGTGCCATGCATACTTCCGAGTACAAGTCCGGCGAGCAGTTTGCCGGTAAGAAGGTGTTGGTCGTGGGATGCGGGAATTCTGGCATGGAAGTGAGCTTGGATTTGTGCCGGCATGGCGCGAAGCCCTCCATGGTGGTGCGCAACACGGTGCATGTCCTACCAAGGGAAATGTTCGGTCTATCCACGTTCGGCATCGCCATGGCGCTGCTGCGATGGCTACCGGTTCAGCTCGTCGACCGGTTCCTTCTCACGGCGGCTCACCTCATCCTCGGTAACACGGGGCAGTTCGGCCTAAGGCGGCCCAAAACAGGGCCCATCGAGCTCAAGAACCTCACCGGCAGGACACCCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGTAAAGCAGAGTGTGACTCACTCTTGTTCGTTTTATTTTTCTTTCTGTCCGCACTGCACTATACTACTACTAGTGATATATATCTCGAGATGATACGGATTATATGGTCAACTGTCAAGCCCAAGGATGTTAATTATATGTCTATATGTACGTGTGCTTTATGTGTTGTAGGATGCCGGTGTCTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTC] [+] EMBL AK105488 [GCAGTAAAAAAAGCGCCGCTACCTACACACACAACCGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGGGCCCGTCGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGG GCGTTCCGGCGACGGTGCTTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCCTCGCTCTCCACCTGCCCAAGCGC TTCTGCGAGC TGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACATGGAGGCGTACGCCGCGGCGGCGGGCGTCGCGCCGCGCTTCGGCGCCACCGTCGAGGAGGCCGCGTTCGACGCGGCCGTCGGCGCATGGAGGGTGCGTCTCGACGGCGGGGAGGTGCTCATGGCGCGGTGGCTCGTCGTCGCGACGGGGGAGAACGCCGAGCCGCGGGTGCCGGACTTTCCCGGCATGCAGAAGTTCGCCGGGTGTGCCATGCATACTTCCGAGTACAAGTCCGGCGAGCAGTTTGCCGGTAAGAAGGTGTTGGTCGTGGGATGCGGGAATTCTGGCATGGAAGTGAGCTTGGATTTGTGCCGGCATGGCGCGAAGCCCTCCATGGTGGTGCGCAACACGGTGCATGTCCTACCAAGGGAAATGTTCGGTCTATCCACGTTCGGCATCGCCATGGCGCTGCTGCGATGGCTACCGGTTCAGCTCGTCGACCGGTTCCTTCTCACGGCGGCTCACCTCATCCTCGGTAACACGGGGCAGTTCGGCCTAAGGCGGCCCAAAACAGGGCCCATCGAGCTCAAGAACCTCACCGGCAGGACACCCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGTAAAGCAGAGTGTGACTCACTCTTGTTCGTTTTATTTTTCTTTCTGTCCGCACTGCACTATACTACTACTAGTGATATATATCTCGAGATGATACGGATTATATGGTCAACTGTCAAGCCCAAGGATGTTAATTATATGTCTATATGTACGTGTGCTTTATGTGTTGTAGGATGCCGGTGTCTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTC] [+] EMBL C26792 [ CCGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGGGCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGGNGCGTTCCGGCGACGNTGCTTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCTTCGCTCTCCACCTGCCCAAGCGC TTCTGCNAGC TGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACAT ] [+] EMBL C26659 [ CGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTTCCGGGCGCCGTNATCGTCGGCGCGGGCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTTGCGGCGCGGG GCGTTCCGGCGACGGTGCTTGAGCGGTCCGACTCGCTGGCGTNCACGTTGCGCCACCGCATGTACGANCGNCTCGCTCTCCANCTGNCCAAGCGCTTTCTTCGAGCTTGCCGNTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACAT ] consensusID : consensus_7099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [AGGCCCCATCGAGCTCAAGACCNTCACCGGCAGGACACCCGTACTGGACCGTTGGGACGNTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTCCCTTTTCAACAAAGACTGATAATCTTGCTCTGCCTTAAAAA] [+] EMBL AU081508 [AGGCCCCATCGAGCTCAAGACCNTCACCGGCAGGACACCCGTACTGGACCGTTGGGACGNTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTCCCTTTTCAACAAAGACTGATAATCTTGCTCTGCCTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7099#0 GCAGTAAAAAAAGCGCCGCTACCTACACACACAACCGCTCTGCACAAGGGGCCATGGACA 60 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 ACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGG 120 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGGGCGTTCCGGCGACGGTGC 180 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCCTCGCTC 240 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TCCACCTGCCCAAGCGCTTCTGCGAGCTGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGA 300 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CGTACCCGTCCAAGGACCAGTTCGTGGCGTACATGGAGGCGTACGCCGCGGCGGCGGGCG 360 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TCGCGCCGCGCTTCGGCGCCACCGTCGAGGAGGCCGCGTTCGACGCGGCCGTCGGCGCAT 420 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GGAGGGTGCGTCTCGACGGCGGGGAGGTGCTCATGGCGCGGTGGCTCGTCGTCGCGACGG 480 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GGGAGAACGCCGAGCCGCGGGTGCCGGACTTTCCCGGCATGCAGAAGTTCGCCGGGTGTG 540 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CCATGCATACTTCCGAGTACAAGTCCGGCGAGCAGTTTGCCGGTAAGAAGGTGTTGGTCG 600 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TGGGATGCGGGAATTCTGGCATGGAAGTGAGCTTGGATTTGTGCCGGCATGGCGCGAAGC 660 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CCTCCATGGTGGTGCGCAACACGGTGCATGTCCTACCAAGGGAAATGTTCGGTCTATCCA 720 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CGTTCGGCATCGCCATGGCGCTGCTGCGATGGCTACCGGTTCAGCTCGTCGACCGGTTCC 780 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TTCTCACGGCGGCTCACCTCATCCTCGGTAACACGGGGCAGTTCGGCCTAAGGCGGCCCA 840 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 AAACAGGGCCCATCGAGCTCAAGAACCTCACCGGCAGGACACCCGTACTGGAC-GTTGGG 899 consensus_7099#1 ----AGGCCCCATCGAGCTCAAGACCNTCACCGGCAGGACACCCGTACTGGACCGTTGGG 56 *** **************** * ************************** ****** consensus_7099#0 ACGCTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGAAGGAGATGACG 959 consensus_7099#1 ACGNTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCG 116 *** ********************************************* ******* ** consensus_7099#0 AGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCC 1019 consensus_7099#1 AGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCC 176 ************************************************************ consensus_7099#0 ACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGTAAAGCAGAGTGTGACTCACTCT 1079 consensus_7099#1 ACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGG----------------------- 213 ************************************* consensus_7099#0 TGTTCGTTTTATTTTTCTTTCTGTCCGCACTGCACTATACTACTACTAGTGATATATATC 1139 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TCGAGATGATACGGATTATATGGTCAACTGTCAAGCCCAAGGATGTTAATTATATGTCTA 1199 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TATGTACGTGTGCTTTATGTGTTGTAGGATGCCGGTGTCTTGTTCACGAGGGAGGGCATT 1259 consensus_7099#1 ----------------------------ATGCCGGTGACTTGTTCACGAGGGAGGGCATT 245 ********* ********************** consensus_7099#0 TCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTC 1319 consensus_7099#1 TCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTC 305 ************************************************************ consensus_7099#0 ACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACAT 1379 consensus_7099#1 ACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACAT 365 ************************************************************ consensus_7099#0 TGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCC 1439 consensus_7099#1 TGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCC 425 ************************************************************ consensus_7099#0 TTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATA 1499 consensus_7099#1 TTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATA 485 ************************************************************ consensus_7099#0 ACACCATGTTCTATCTC----------------------------------------- 1516 consensus_7099#1 ACACCATGTTCTATCTCCCTTTTCAACAAAGACTGATAATCTTGCTCTGCCTTAAAAA 543 ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||