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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1516 fasta sequence
[GCAGTAAAAAAAGCGCCGCTACCTACACACACAACCGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGGGCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGG-GCGTTCCGGCGACGGTGCTTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCCTCGCTCTCCACCTGCCCAAGCGC-TTCTGCGAGC-TGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACATGGAGGCGTACGCCGCGGCGGCGGGCGTCGCGCCGCGCTTCGGCGCCACCGTCGAGGAGGCCGCGTTCGACGCGGCCGTCGGCGCATGGAGGGTGCGTCTCGACGGCGGGGAGGTGCTCATGGCGCGGTGGCTCGTCGTCGCGACGGGGGAGAACGCCGAGCCGCGGGTGCCGGACTTTCCCGGCATGCAGAAGTTCGCCGGGTGTGCCATGCATACTTCCGAGTACAAGTCCGGCGAGCAGTTTGCCGGTAAGAAGGTGTTGGTCGTGGGATGCGGGAATTCTGGCATGGAAGTGAGCTTGGATTTGTGCCGGCATGGCGCGAAGCCCTCCATGGTGGTGCGCAACACGGTGCATGTCCTACCAAGGGAAATGTTCGGTCTATCCACGTTCGGCATCGCCATGGCGCTGCTGCGATGGCTACCGGTTCAGCTCGTCGACCGGTTCCTTCTCACGGCGGCTCACCTCATCCTCGGTAACACGGGGCAGTTCGGCCTAAGGCGGCCCAAAACAGGGCCCATCGAGCTCAAGAACCTCACCGGCAGGACACCCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGTAAAGCAGAGTGTGACTCACTCTTGTTCGTTTTATTTTTCTTTCTGTCCGCACTGCACTATACTACTACTAGTGATATATATCTCGAGATGATACGGATTATATGGTCAACTGTCAAGCCCAAGGATGTTAATTATATGTCTATATGTACGTGTGCTTTATGTGTTGTAGGATGCCGGTGTCTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTC]
[+] EMBL AK105488 [GCAGTAAAAAAAGCGCCGCTACCTACACACACAACCGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGGGCCCGTCGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGG GCGTTCCGGCGACGGTGCTTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCCTCGCTCTCCACCTGCCCAAGCGC TTCTGCGAGC TGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACATGGAGGCGTACGCCGCGGCGGCGGGCGTCGCGCCGCGCTTCGGCGCCACCGTCGAGGAGGCCGCGTTCGACGCGGCCGTCGGCGCATGGAGGGTGCGTCTCGACGGCGGGGAGGTGCTCATGGCGCGGTGGCTCGTCGTCGCGACGGGGGAGAACGCCGAGCCGCGGGTGCCGGACTTTCCCGGCATGCAGAAGTTCGCCGGGTGTGCCATGCATACTTCCGAGTACAAGTCCGGCGAGCAGTTTGCCGGTAAGAAGGTGTTGGTCGTGGGATGCGGGAATTCTGGCATGGAAGTGAGCTTGGATTTGTGCCGGCATGGCGCGAAGCCCTCCATGGTGGTGCGCAACACGGTGCATGTCCTACCAAGGGAAATGTTCGGTCTATCCACGTTCGGCATCGCCATGGCGCTGCTGCGATGGCTACCGGTTCAGCTCGTCGACCGGTTCCTTCTCACGGCGGCTCACCTCATCCTCGGTAACACGGGGCAGTTCGGCCTAAGGCGGCCCAAAACAGGGCCCATCGAGCTCAAGAACCTCACCGGCAGGACACCCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGTAAAGCAGAGTGTGACTCACTCTTGTTCGTTTTATTTTTCTTTCTGTCCGCACTGCACTATACTACTACTAGTGATATATATCTCGAGATGATACGGATTATATGGTCAACTGTCAAGCCCAAGGATGTTAATTATATGTCTATATGTACGTGTGCTTTATGTGTTGTAGGATGCCGGTGTCTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTC]
[+] EMBL C26792 [ CCGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGGGCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGGNGCGTTCCGGCGACGNTGCTTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCTTCGCTCTCCACCTGCCCAAGCGC TTCTGCNAGC TGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACAT ]
[+] EMBL C26659 [ CGCTCTGCACAAGGGGCCATGGACAACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTTCCGGGCGCCGTNATCGTCGGCGCGGGCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTTGCGGCGCGGG GCGTTCCGGCGACGGTGCTTGAGCGGTCCGACTCGCTGGCGTNCACGTTGCGCCACCGCATGTACGANCGNCTCGCTCTCCANCTGNCCAAGCGCTTTCTTCGAGCTTGCCGNTCCTCCCGTTCCCGGAGGAGTACCCGACGTACCCGTCCAAGGACCAGTTCGTGGCGTACAT ]
consensusID : consensus_7099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[AGGCCCCATCGAGCTCAAGACCNTCACCGGCAGGACACCCGTACTGGACCGTTGGGACGNTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTCCCTTTTCAACAAAGACTGATAATCTTGCTCTGCCTTAAAAA]
[+] EMBL AU081508 [AGGCCCCATCGAGCTCAAGACCNTCACCGGCAGGACACCCGTACTGGACCGTTGGGACGNTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTCCCTTTTCAACAAAGACTGATAATCTTGCTCTGCCTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7099#0 GCAGTAAAAAAAGCGCCGCTACCTACACACACAACCGCTCTGCACAAGGGGCCATGGACA 60
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 ACAAGCCGGCGCAAGAACGCCGCGAGACGTGGGTCCCGGGCGCCGTCATCGTCGGCGCGG 120
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GCCCGTNGGGGCTCGCCGCGGCGGCGTGCCTCGCGGCGCGGGGCGTTCCGGCGACGGTGC 180
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TTGAGCGGTCCGACTCGCTGGCGTCCACGTGGCGCCACCGCATGTACGACCGCCTCGCTC 240
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TCCACCTGCCCAAGCGCTTCTGCGAGCTGCCGCTCCTCCCGTTCCCGGAGGAGTACCCGA 300
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CGTACCCGTCCAAGGACCAGTTCGTGGCGTACATGGAGGCGTACGCCGCGGCGGCGGGCG 360
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TCGCGCCGCGCTTCGGCGCCACCGTCGAGGAGGCCGCGTTCGACGCGGCCGTCGGCGCAT 420
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GGAGGGTGCGTCTCGACGGCGGGGAGGTGCTCATGGCGCGGTGGCTCGTCGTCGCGACGG 480
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GGGAGAACGCCGAGCCGCGGGTGCCGGACTTTCCCGGCATGCAGAAGTTCGCCGGGTGTG 540
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CCATGCATACTTCCGAGTACAAGTCCGGCGAGCAGTTTGCCGGTAAGAAGGTGTTGGTCG 600
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TGGGATGCGGGAATTCTGGCATGGAAGTGAGCTTGGATTTGTGCCGGCATGGCGCGAAGC 660
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CCTCCATGGTGGTGCGCAACACGGTGCATGTCCTACCAAGGGAAATGTTCGGTCTATCCA 720
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CGTTCGGCATCGCCATGGCGCTGCTGCGATGGCTACCGGTTCAGCTCGTCGACCGGTTCC 780
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TTCTCACGGCGGCTCACCTCATCCTCGGTAACACGGGGCAGTTCGGCCTAAGGCGGCCCA 840
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 AAACAGGGCCCATCGAGCTCAAGAACCTCACCGGCAGGACACCCGTACTGGAC-GTTGGG 899
consensus_7099#1 ----AGGCCCCATCGAGCTCAAGACCNTCACCGGCAGGACACCCGTACTGGACCGTTGGG 56
*** **************** * ************************** ******
consensus_7099#0 ACGCTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGAAGGAGATGACG 959
consensus_7099#1 ACGNTAGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCG 116
*** ********************************************* ******* **
consensus_7099#0 AGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCC 1019
consensus_7099#1 AGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCC 176
************************************************************
consensus_7099#0 ACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGTAAAGCAGAGTGTGACTCACTCT 1079
consensus_7099#1 ACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGG----------------------- 213
*************************************
consensus_7099#0 TGTTCGTTTTATTTTTCTTTCTGTCCGCACTGCACTATACTACTACTAGTGATATATATC 1139
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TCGAGATGATACGGATTATATGGTCAACTGTCAAGCCCAAGGATGTTAATTATATGTCTA 1199
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TATGTACGTGTGCTTTATGTGTTGTAGGATGCCGGTGTCTTGTTCACGAGGGAGGGCATT 1259
consensus_7099#1 ----------------------------ATGCCGGTGACTTGTTCACGAGGGAGGGCATT 245
********* **********************
consensus_7099#0 TCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTC 1319
consensus_7099#1 TCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTC 305
************************************************************
consensus_7099#0 ACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACAT 1379
consensus_7099#1 ACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACAT 365
************************************************************
consensus_7099#0 TGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCC 1439
consensus_7099#1 TGCCAATGGAGAGAAAGGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCC 425
************************************************************
consensus_7099#0 TTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATA 1499
consensus_7099#1 TTTTGATTTGACTGGAAATGTACAGTGTTTTGATTAGGAATATTGTATTGTGTGCATATA 485
************************************************************
consensus_7099#0 ACACCATGTTCTATCTC----------------------------------------- 1516
consensus_7099#1 ACACCATGTTCTATCTCCCTTTTCAACAAAGACTGATAATCTTGCTCTGCCTTAAAAA 543
*****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||