These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence [GGAGGGCTGCGCGACGCGCGGGATGGGAAAGGGAGGTGGGTTCAGTTGGGGGAGAGGGTGTAGAATAGTTATATGGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAAGCCCCAAGTCAGATGAGC-AACATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAGAAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGAATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTTCGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAATCTTTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGATCATAGATGCCTCTTTTATTTTATCTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAGTTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTTTATCATTGTTCAAGCAGCAGTTCATGTGGGAAACTTGCATGGAGGGTTCATTCATGCTGTATTAATGGTGGTTCCAAGGANNAAAGAGAGGAGGNGTGTGTGGGAGGGGAGGATGGAGTGTGGGGGGTGGG] [+] EMBL CB630058 [GGAGGGCTGCGCGACGCGCGGGATGGGAAAGGGAGGTGGGTTCAGTTGGGGGAGAGGGTGTAGAATAGTTATATGGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAAGCCCCAAGTCAGATGAGC AACATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAGAAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGAATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTTCGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAATCTTTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGATCATAGATGCCTCTTTTATTTTATCTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAGTTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTTTATCATTGTTCAAG ] [+] EMBL CA757675 [ TGTAGAGGAGTTATATGGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAAGCCCCAAGTCAGATGAGCGGAGATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAGAAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGAATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTTCGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAATCTNTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGATCATAGATGCCTCTNTTATTTTAACTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAGTTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTGTATCATTGGTCAAGCAGCAGTTCATGTGGGAAACTTGCATGGAGGGTTCATTCATGCTGTATTAATGGTGGTTCCAAGGANNAAAGAGAGGAGGNGTGTGTGGGAGGGGAGGATGGAGTGTGGGGGGTGGG] consensusID : consensus_7104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [ACCTCCGGTGATCGCCGCCGCCGCCGCCTCGGGCGATGGCCTCCGCTTCCGGCCTCGTCAACGCCGCCCTCCCGGACGACCTGCTCGCGGAGGTGTTCCGCCGCGTCGCCGCCGCGGGGGGCAAGGCCGACCTCGACAGCTGCGCGCTCGTGTGCCGCCGCTGGCGCGGCGTCGAGCGCGCGTCCCGCCGCGCCGCCAGGGTCCCCGTCGACGGGCCCGACGGCGACGCCGTCGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCGCCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCCGCCGCGGAGCGGAGCAGGGCACAGGGTTGGGATAACGAAAACCCCAAGTTAGATGAGCAACATATGCAGTGTTCCACACTAAGCGAAGATACGCAAAAAGAAAATGGCAGTGATGGTGTTAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTGGTGGGAATTGCAAATCGTTGCCGGAATCTGCAATCGTTAGTGCTTTCGGGTGGCTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGATGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACGTAGTAAATCATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATAACATACAGATCCCTGTATGCAATTGGAACCTACT] [+] EMBL CB632965 [ACCTCCGGTGATCGCCGCCGCCGCCGCCTCGGGCGATGGCCTCCGCTTCCGGCCTCGTCAACGCCGCCCTCCCGGACGACCTGCTCGCGGAGGTGTTCCGCCGCGTCGCCGCCGCGGGGGGCAAGGCCGACCTCGACAGCTGCGCGCTCGTGTGCCGCCGCTGGCGCGGCGTCGAGCGCGCGTCCCGCCGCGCCGCCAGGGTCCCCGTCGACGGGCCCGACGGCGACGCCGTCGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCGCCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCCGCCGCGGAGCGGAGCAGGGCACAGGGTTGGGATAACGAAAACCCCAAGTTAGATGAGCAACATATGCAGTGTTCCACACTAAGCGAAGATACGCAAAAAGAAAATGGCAGTGATGGTGTTAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTGGTGGGAATTGCAAATCGTTGCCGGAATCTGCAATCGTTAGTGCTTTCGGGTGGCTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGATGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACGTAGTAAATCATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATAACATACAGATCCCTGTATGCAATTGGAACCTACT] consensusID : consensus_7104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GTCTCCTTTTTGAGGTTTATCATTGTTCAAGCCAGCAGTTCATGTTGTAAACTTTGCATTGAGGTTTCATTTCATGCTGATATTTAGTGTTGTATTCCCCCGAGTTTCATTGTTTATTGACAACATTTCTTACAAGGTGGTTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGTTGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACATAGTAAATTATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATTACAGACAGATCCCTGTATGCTATTGGAACCTACTGCCATAACTTGGAAGTCCTATCCGTGGAGTCCAAGCATGTTAATGAAAACAAAGGAATAATCTCTGTTGCAAAGGATGCCAATATTTGGAATCCTTAAA] [+] EMBL AU096459 [GTCTCCTTTTTGAGGTTTATCATTGTTCAAGCCAGCAGTTCATGTTGTAAACTTTGCATTGAGGTTTCATTTCATGCTGATATTTAGTGTTGTATTCCCCCGAGTTTCATTGTTTATTGACAACATTTCTTACAAGGTGGTTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGTTGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACATAGTAAATTATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATTACAGACAGATCCCTGTATGCTATTGGAACCTACTGCCATAACTTGGAAGTCCTATCCGTGGAGTCCAAGCATGTTAATGAAAACAAAGGAATAATCTCTGTTGCAAAGGATGCCAATATTTGGAATCCTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7104#1 ACCTCCGGTGATCGCCGCCGCCGCCGCCTCGGGCGATGGCCTCCGCTTCCGGCCTCGTCA 60 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 ------------------------------------------------------------ consensus_7104#1 ACGCCGCCCTCCCGGACGACCTGCTCGCGGAGGTGTTCCGCCGCGTCGCCGCCGCGGGGG 120 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 ------------------------------------------------------------ consensus_7104#1 GCAAGGCCGACCTCGACAGCTGCGCGCTCGTGTGCCGCCGCTGGCGCGGCGTCGAGCGCG 180 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 --------------------------------------GGAGGGCTGCGCGACGCGCGGG 22 consensus_7104#1 CGTCCCGCCGCGCCGCCAGGGTCCCCGTCGACGGGCCCGACGGCGACGCCGTCGTCCGCT 240 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 ATGGGAAAGGGAGGTGGGTTCAGTTGGGGGAGAGGGTGTAGAATAGTTATATGGTCCGCT 82 consensus_7104#1 GCGTCGCCGACCGGTTCCCGGGCCTCGCCGATGTCTTCCTCGACCACGGCCTCTACATCG 300 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 GCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCG 142 consensus_7104#1 CCGCCGGCGCCTCCGCCGCCGCCGCGGAGCGGAGCAGGGCACAGGGTTGGGATAACGAAA 360 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 CCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAA 202 consensus_7104#1 ACCCCAAGTTAGATGAGCAACATATGCAGTGTTCCACACTAAGCGAAGATACGCAAAAAG 420 consensus_7104#2 ------------------------------------------------------------ consensus_7104#0 GCCCCAAGTCAGATGAGCAACATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAG 262 consensus_7104#1 AAAATGGCAGTGATGGTGTTAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCA 480 consensus_7104#2 -------------------------------GTCTCCT--TTTTGAGGTTTATCATT--G 25 consensus_7104#0 AAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCA 322 * * ** * ** * * **** consensus_7104#1 TTGAGGG--------------------------TTGCAAAGGGCTTGAAAAGCTGACTCT 514 consensus_7104#2 TTCAAGC--------------------------CAGCA----GTTCATGTTGTAAACTTT 55 consensus_7104#0 TTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCT 382 ** * * *** * * * *** * consensus_7104#1 AAACTGGTTTTTGCACATTTCTGAAAAGGGGCTGG-TGGGAATTGCAAATCGTTGCCGGA 573 consensus_7104#2 GCATTGAGGTTT---CATTTCATGCTGATATTTAG-TGTTGTATTCCCCCGAGTTTCATT 111 consensus_7104#0 AAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGA 442 * ** *** ****** * * ** * * * * consensus_7104#1 ATCTGCAATCGTTAGTGCTTTCG-GGTGGCTATGTTCAAAAC-CATGGGTTGATTACTCT 631 consensus_7104#2 GTTTATTGACAACATTTCTTACAAGGTGGTTATGTTCAAAAC-CATGGGTTGATTACTCT 170 consensus_7104#0 ATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTT 502 * * * * * *** * **** * ** ** ** ** * consensus_7104#1 GGCAGAGG-GATGCAATCTTA-GTGAATTA-AAGCTG-TGTGGTGTTCAAGAGTTGA--- 684 consensus_7104#2 GGCAGAGG-GTTGCAATCTTA-GTGAATTA-AAGCTG-TGTGGTGTTCAAGAGTTGA--- 223 consensus_7104#0 CGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAA 562 * * * * * * ** * * * *** * * * * **** ** consensus_7104#1 -----CGGACGAAGGACTGGTTGAA--TTTGTAAAGATACGTAGTAAATCATTGGTCTCT 737 consensus_7104#2 -----CGGACGAAGGACTGGTTGAA--TTTGTAAAGATACATAGTAAATTATTGGTCTCT 276 consensus_7104#0 TCTTTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGA-TCATAGATGCCT 621 * ** * * * ** * ** * * * * * ** * * ** * * ** consensus_7104#1 CTTGATATTTCTTTCTGCAATGGTTGCATAACATACAGATCCCTGTATGCAATTGGAACC 797 consensus_7104#2 CTTGATATTTCTTTCTGCAATGGTTGCATTACAGACAGATCCCTGTATGCTATTGGAACC 336 consensus_7104#0 CTTT-TATTTTATCTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAG 680 *** ***** * * ** **** * * * * * consensus_7104#1 TACT-------------------------------------------------------- 801 consensus_7104#2 TACTGCCATAACTTGGAAGTCCTATCCGTGGAGTCCAAGCATGTTAATGAAAACAAAGGA 396 consensus_7104#0 TTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTTTATCATTGTTCAAGCAGCAGTTCATGT 740 * * consensus_7104#1 ------------------------------------------------------------ consensus_7104#2 ATAATCTCTGTTGCAAAGGATGCCAATATTTGGAATCCTTAAA----------------- 439 consensus_7104#0 GGGAAACTTGC-ATGGAGGGTTCATTCATGCTGTATTAATGGTGGTTCCAAGGANNAAAG 799 consensus_7104#1 --------------------------------------------- consensus_7104#2 --------------------------------------------- consensus_7104#0 AGAGGAGGNGTGTGTGGGAGGGGAGGATGGAGTGTGGGGGGTGGG 844 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||