These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1217 fasta sequence [TAGAAGCGATTCGCGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCCCCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTGCTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCCTACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTTTGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGAGGAAGATTGTAGAAC-AGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTGAAGGAAGCATGTAAAGAAGCTCTTAGGAATTATAACAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGAACAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTACAACCTGCCTTTGACACTGCTTACTTCCGTGCCCTGACTGGCTTAATCTGAAAAGAAAAGAACTATTTTATATGCAGGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAA] [+] EMBL AK106523 [TAGAAGCGATTCGCGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCCCCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTGCTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCCTACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTTTGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGAGGAAGATTGTAGAAC AGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTGAAGGAAGCATGTAAAGAAGCTCTTAGGAATTATAACAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGAACAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTACAACCTGCCTTTGACACTGCTTACTTCCGTGCCCTGACTGGCTTAATCTGAAAAGAAAAGAACTATTTTATATGCAGGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAA] [+] EMBL AU081544 [ CGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCCCCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTGCTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCCTACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTTTGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGANGAAGATTGTAGAACAAGCTATTCAGCTTGACAGCCACTCTGNTAAGGCACATTACATGCTCGGGC ] consensusID : consensus_7109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [GAAAATTTATCCAAGCGAACGAGTCNGTCAATTGCATAAGTTAAAGNAAGCATGTAAAGAAGCTCTTAGGAATTATACCAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGACCAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAAAGTGGCTGTCATAAAAAAAA] [+] EMBL AU081545 [GAAAATTTATCCAAGCGAACGAGTCNGTCAATTGCATAAGTTAAAGNAAGCATGTAAAGAAGCTCTTAGGAATTATACCAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGACCAGCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTCAGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCATCTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTGGTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCTTACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTTCAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTACATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTAGCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCCACAGTAAAAGAAAATTAAAGTGGCTGTCATAAAAAAAA] consensusID : consensus_7109#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TAGAACAGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTTGAAGGAAGCATGTAAAGAACTCTTAGGAATTATAACAGCCTTGGACAATCCTCCTGGCATATGTCCCCGAGGAACAGCTAAATGGACTTTGAGGAAGTTTTCGGATGCCAGGAGTCTGATATTCCAACAGAGTTCCTGATCATCTCTGCTGCCAATTACTCTTGATATTTTCCAGAAANCCCGGTGATAACCCCCAGTGGGA] [+] EMBL C73166 [TAGAACAGCTATTCAGCTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGACGAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACATCCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAATGGGAAAATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGCTTGAAGGAAGCATGTAAAGAACTCTTAGGAATTATAACAGCCTTGGACAATCCTCCTGGCATATGTCCCCGAGGAACAGCTAAATGGACTTTGAGGAAGTTTTCGGATGCCAGGAGTCTGATATTCCAACAGAGTTCCTGATCATCTCTGCTGCCAATTACTCTTGATATTTTCCAGAAANCCCGGTGATAACCCCCAGTGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7109#0 TAGAAGCGATTCGCGCGCGCCGCCGCCTCCTCCCCTCCCCTTCCCCGGAGCGAAGCCGCC 60 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 CCGCCGGGGGGGATGTCGCCGGCGGCGGACAGCGCGGCGTCGAAGCGGCAGGCGGAGCTG 120 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 CTCAAGCAGGAGGGCAACGCCTTCTTCAAGAAGGACCGCATCAGCGCCGCCATCGACGCC 180 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 TACACCGGGGCCATAGCTCTCTGCCCAAAGGTTGCAGTATATTGGACCAACCGAGCACTT 240 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 TGCTACAAGAGGCGGAATGAGTGGGTTAGGGCTGAGGAAGATTGTAGAACAGCTATTCAG 300 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 CTTGACAGCCACTCTGTTAAGGCACATTACATGCTCGGGCTTGCACTTCTCAACAAGGAC 360 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 GAATTGGCCGAGGGAATAAAAGAACTAGAGAAGTCGTTGGAGCTTGGAAGGGGTGCACAT 420 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 CCAGCAAGTTACATGGTTGAAGAGATCTGGCAAGAGCTTTCTAAAGCAAAATACATAGAA 480 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 TGGGAAAATTTATC-AAGCGAACGAGTCCGTCAATTGCATAAGCTGAAGGAAGCATGTAA 539 consensus_7109#1 ---GAAAATTTATCCAAGCGAACGAGTCNGTCAATTGCATAAGTTAAAGNAAGCATGTAA 57 consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 AGAAGCTCTTAGGAATTATAACAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGAACA 599 consensus_7109#1 AGAAGCTCTTAGGAATTATACCAGCCTTGACAATCCTCCTGCATATGTCCCCGAGGACCA 117 consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 GCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGT 659 consensus_7109#1 GCTAAATGAGCTTGAGGAAGTTTTTCGGAATGCCAGGAAGTCTGATATTCCAACAGAAGT 177 consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 ACAACCTGCCTTTGACACTGCTTACTTCCGTGCCCTGACTGGCTTAATCTGAAAAGAAAA 719 consensus_7109#1 ------------------------------------------------------------ consensus_7109#2 ------------------------------------------------------------ consensus_7109#0 GAACTATTTTATATGCAGGTTCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTC 779 consensus_7109#1 --------------------TCCTGATCATCTCTGCTGCAAAATTACTCTTGATATTTTC 217 consensus_7109#2 --------------------------------------TAGAACAGCTATTCAGCTTGAC 22 * ** ** ** * ** * consensus_7109#0 AGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCAT 839 consensus_7109#1 AGAGACCCGGTGATAACCCCAAGTGGAATCACGTATGAGAGGGCGGTGATTCTTGATCAT 277 consensus_7109#2 AGCCACTCTGTTAAGGCAC--------ATTACATGCTCG-GGCTTGCACTTCTCAACAAG 73 ** ** * ** * * * ** ** * * ** * **** * * consensus_7109#0 CTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG 899 consensus_7109#1 CTTCATAGGGTGGGGAAGTTTGATCCTGTGACCCGTGAGACACTTGAACCACACCAACTG 337 consensus_7109#2 GACGAATTGGCCGAGGGAATAAA----AGAACTAGAGAAGTCGTTGGAGCTTG--GAAGG 127 * ** * * * * ** * ** *** * * * * consensus_7109#0 GTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCT 959 consensus_7109#1 GTTCCTAACCTTGCCATCAAGGAAGCTGTCCATGCATTTTTGAGTGAACATGGTTGGGCT 397 consensus_7109#2 GGTGCACATCCAGCAAGTTACATGGTTG---AAGAGATCTGGCAAGAGCTTTCTAAAGCA 184 * * * * * ** * * * ** * * * * * ** * * * ** consensus_7109#0 TACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTT 1019 consensus_7109#1 TACAGGATGAGATGACTACTTTGAATTACACCTGGGCTTGGAGCTTTGGAGGCAACATTT 457 consensus_7109#2 AAATACATAGAATGGGAA-----AATTTATCAAGCGAACGAGTCCGTCAATTGCATAAGC 239 * ** *** * **** * * * * * * * * * consensus_7109#0 CAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTA 1079 consensus_7109#1 CAGATTGCAATATACATGTTTCGGTTAGTCAACTTAAATGTGTCATTTTGTTTATCTTTA 517 consensus_7109#2 TTGAAGGAAGCATGTAAAGAACTCTTAGGAATTATAACAGCCTTGGACAATCC-TCCTGG 298 ** * * ** * * **** * *** * * * ** * consensus_7109#0 CATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTA 1139 consensus_7109#1 CATATTTATTGGTGGAAAAGGTTTTACCTGGGATGGCTGTGTACAGATTCCCCTTCTCTA 577 consensus_7109#2 CATATGTCCCCGAGGAACAG-------CTAAATGGACTTTGAGGAAGTTTTCGGATGCCA 351 ***** * * **** ** ** * ** ** * ** * * * consensus_7109#0 GCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCC 1199 consensus_7109#1 GCTATCCCTCCTCTCTACTCTGTTCATGTGTAATGCTTGGTATCAGATTATCACTTATCC 637 consensus_7109#2 GGAGTCTGATATTCCAACAGAGTTCCTG-ATCATCTCTGCTGCCA----ATTACTC-TTG 405 * ** * * ** **** ** * ** ** * ** ** *** * consensus_7109#0 ACAGTAAAAGAAAATTAA-------------------- 1217 consensus_7109#1 ACAGTAAAAGAAAATTAAAGTGGCTGTCATAAAAAAAA 675 consensus_7109#2 ATATTTTCCAGAAANCCCGGTGATAACCCCCAGTGGGA 443 * * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||