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Oryza sativa
cluster # 7113 cluster # 7113       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7113#0 length = 1339 sequences # 4  

consensusID : consensus_7113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1339
fasta sequence
                              [CCTATACTGGGGAAAATCGAGATCCATCAAACAAAATTCATCGAAAAGAAAAACATGGAATGGGTGAATTTTCCGGCATGGCAACGACTGGTGCACTGTATTCTGGACAAGTAATGCCAATCACTTCTAGAGACGGTTCTGGTACCAAACCTAAAGGCACTAGACTTGAGAGAGCTATTCGGGATCTGCAAAAGATTGCTGCTGAATACAGACCACCAGCTATCGATATTAACGAGGTAGATCCAAATGGCCAGGTAGCAGTTAAAAGACGGTTGCCTCCAGAAGTAAAACAAAAACTAGCCAAAGTTGCAAGGCTATCGGCAAACCATGGAAAGATTCAAGAACATGAGTTAATGGATCGCCTCATGGGCATAGTTGGGCATCTTGTGCAGCGAAGGACACTCAGGAGAAACATGAAAGAAATGGTAGAATCAGGTCTGTCCGCTAAACAAGAGAAGGCTGATAAATTCCAACGTGTAAAAATGGAGATCAATGAAATGATCAAATCGCGTGTGGCTGCCAAGGCCAAGGTCAATGAACACCACAGTGGATCAGCTGATGATTTTCAGATTGCGAATGATGAAAAAAGATATTTAAAAGGAAAGTCTGTAATGGATGCTGCTTTGGAGGACAGGATCTGTGATCTGTATGATCTGTACGTTGAGGGTATGGACGAAGATAAGGGCCCTCAAAGCAGGAAGTTATATGTGGAGCTGGCGGAGT-----TGTGGCCTGAAGGTTCCATGGATAATGTCGGAATCAAAGATGCAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATGAAAAAGAAAAAAAGAAAACCAGAATCTGACCTTGTAGATACACAAGCTAACGCCATGAAGGGCCCCTCTCAGCATGTAGAGAAGAACAAGCCTCCTAAGCGTGCTGATGAGGCAGTTGAAACCGTGCTTTGTCTCCCGTTCTATGACCAACAACCGAGCTGATTGTTTTGGTGTATGCATTGATGAAATTTCAATCCTCCTAGGCGCTTGTCGGATGCTGTAACAAATACCCTTGTGGAGAGGATGCCATTGGTCCTTCGTAATTTTTATGATCTATATAGTTCCTTTTC]

[+] EMBL AK058727             [CCTATACTGGGGAAAATCGAGATCCATCAAACAAAATTCATCGAAAAGAAAAACATGGAATGGGTGAATTTTCCGGCATGGCAACGACTGGTGCACTGTATTCTGGACAAGTAATGCCAATCACTTCTAGAGACGGTTCTGGTACCAAACCTAAAGGCACTAGACTTGAGAGAGCTATTCGGGATCTGCAAAAGATTGCTGCTGAATACAGACCACCAGCTATCGATATTAACGAGGTAGATCCAAATGGCCAGGTAGCAGTTAAAAGACGGTTGCCTCCAGAAGTAAAACAAAAACTAGCCAAAGTTGCAAGGCTATCGGCAAACCATGGAAAGATTCAAGAACATGAGTTAATGGATCGCCTCATGGGCATAGTTGGGCATCTTGTGCAGCGAAGGACACTCAGGAGAAACATGAAAGAAATGGTAGAATCAGGTCTGTCCGCTAAACAAGAGAAGGCTGATAAATTCCAACGTGTAAAAATGGAGATCAATGAAATGATCAAATCGCGTGTGGCTGCCAAGGCCAAGGTCAATGAACACCACAGTGGATCAGCTGATGATTTTCAGATTGCGAATGATGAAAAAAGATATTTAAAAGGAAAGTCTGTAATGGATGCTGCTTTGGAGGACAGGATCTGTGATCTGTATGATCTGTACGTTGAGGGTATGGACGAAGATAAGGGCCCTCAAAGCAGGAAGTTATATGTGGAGCTGGCGGAGT     TGTGGCCTGAAGGTTCCATGGATAATGTCGGAATCAAAGATGCAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTATTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGCGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATGAAGAAGAAAAAAAGAAAACCAGAATCTGACCTTGTAGATACACAAGCTAACGCCATGAAGGGCCCCTCTCAGCATGTAGAGAAGAACAAGCCTCCTAAGCGTGCTGATGAGGCAGTTGAAACCGTGCTTTGTCTCCCGTTCTATGACCAACAACCGAGCTGATTGTTTTGGTGTATGCATTGATGAAATTTCAATCCTCCTAGGCGCTTGTCGGATGCTGTAACAAATACCCTTGTGGAGAGGATGCCATTGGTCCTTCGTAATTTTTATGATCTATATAGTTCCTTTTC]
[+] EMBL CA764522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGATGATTTTCAGATTGCGAATGATGAAAAAAGATATTTAAAAGGAAAGTCTGTAATGGATACTGCTTTGGAGGACAGGATCTGTGATCTGTATGATCTGTACGTTGAGGGTATGGACGAAGATAAGGGCCCTCAAAGCAGGAAGTTATATGTGGAGCTGGCGGAGT     TGTGGCCTGAAGGTTCCATGGATAATGTCGGAATCAAAGATGCAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF316680             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tgacTGGA CTGAAGGAGTAGAAATGTGGCCTGAAGGTTCCATGGATAATGTCGGAATCAAAGATGCAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATGAAAA                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF316681             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGGTTCCATGGATAATGTCGGTATCAAAGATGCAATTAATAGATCGAAGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGAGAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCGCACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGACTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTGACGACATCAACCGGAACACTGGCGAGATGAAAAA                                                                                                                                                                                                                                                                                             ]


>consensus_7113#0 CCTATACTGGGGAAAATCGAGATCCATCAAACAAAATTCATCGAAAAGAAAAACATGGAA TGGGTGAATTTTCCGGCATGGCAACGACTGGTGCACTGTATTCTGGACAAGTAATGCCAA TCACTTCTAGAGACGGTTCTGGTACCAAACCTAAAGGCACTAGACTTGAGAGAGCTATTC GGGATCTGCAAAAGATTGCTGCTGAATACAGACCACCAGCTATCGATATTAACGAGGTAG ATCCAAATGGCCAGGTAGCAGTTAAAAGACGGTTGCCTCCAGAAGTAAAACAAAAACTAG CCAAAGTTGCAAGGCTATCGGCAAACCATGGAAAGATTCAAGAACATGAGTTAATGGATC GCCTCATGGGCATAGTTGGGCATCTTGTGCAGCGAAGGACACTCAGGAGAAACATGAAAG AAATGGTAGAATCAGGTCTGTCCGCTAAACAAGAGAAGGCTGATAAATTCCAACGTGTAA AAATGGAGATCAATGAAATGATCAAATCGCGTGTGGCTGCCAAGGCCAAGGTCAATGAAC ACCACAGTGGATCAGCTGATGATTTTCAGATTGCGAATGATGAAAAAAGATATTTAAAAG GAAAGTCTGTAATGGATGCTGCTTTGGAGGACAGGATCTGTGATCTGTATGATCTGTACG TTGAGGGTATGGACGAAGATAAGGGCCCTCAAAGCAGGAAGTTATATGTGGAGCTGGCGG AGTTGTGGCCTGAAGGTTCCATGGATAATGTCGGAATCAAAGATGCAATTAATAGATCGA AGGAGCGAAGGAGATCATTATACAACCAGCAGAAGGTTCGCAACGAGGAGAGAATGAAGA GAAAAAGGTTGGCTGCGGCAGCTAAACTGCAAGATGGCTACCCTGTTGTAATGCAAAGCG CACTGATCCAGCAAGTGGCACAACCACCCATAACAAACCCTGTCGCCACATACCCTGTGA CTGACCAGGGATCAAAAAGTTTTGACAGAGTTCGTGAAATAAGTGCGAGTGCAAATCCTG ACGACATCAACCGGAACACTGGCGAGATGAAAAAGAAAAAAAGAAAACCAGAATCTGACC TTGTAGATACACAAGCTAACGCCATGAAGGGCCCCTCTCAGCATGTAGAGAAGAACAAGC CTCCTAAGCGTGCTGATGAGGCAGTTGAAACCGTGCTTTGTCTCCCGTTCTATGACCAAC AACCGAGCTGATTGTTTTGGTGTATGCATTGATGAAATTTCAATCCTCCTAGGCGCTTGT CGGATGCTGTAACAAATACCCTTGTGGAGAGGATGCCATTGGTCCTTCGTAATTTTTATG ATCTATATAGTTCCTTTTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)