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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2139 fasta sequence
[CCAATAGAATACAAAAACAGCAGGTGAGGAGAGAGGAGAGAAAAAAAAACAGAGCTTTCTCTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGGTGGTGGTGGTGGGCGCCGCCGGCGA-GATGGGCCCGTAGGCGCCGGTGTGGGCGGCATCCTGTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTTCTTTTCTTTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGGGGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAATCCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTGAAGGGTTGGCTGGTCATGTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGTTGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGGGGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAATAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGATGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCTGGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAACCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCGCATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCCGTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGCTGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGCCCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAACTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGGTATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATGGACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGGTAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGAGGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAATGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGATTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTATTACATTATTGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCTCGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTGCTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTGTAAGAAATAAAGGAAGAAAGAAAAAATGTCCTTGTTGACGATTATTGCCTAAAAA]
[+] EMBL AK070903 [CCAATAGAATACAAAAACAGCAGGTGAGGAGAGAGGAGAGAAAAAAAAACAGAGCTTTCTCTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGGTGGTGGTGGTGGGCGCCGCCGGCGA GATGGGCCCGTAGGCGCCGGTGTGGGCGGCATCCTGTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTTCTTTTCTTTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGGGGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAATCCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTGAAGGGTTGGCTGGTCATGTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGTTGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGGGGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAATAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGATGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCTGGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAACCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCGCATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCCGTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGCTGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGCCCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAACTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGGTATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATGGACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGGTAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGAGGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAATGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGATTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTATTACATTATTGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCTCGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTGCTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTGTAAGAAATAAAGGAAGAAAGAAAAAATGTC ]
[+] EMBL AU062576 [ GAGCTTTCTCTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGGTGGTGGTGGTGGGCGCCGCCGG GAGGATGGGCCCGTA GCGCCGGTGTGGGCGGCATCCTGTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTTCTTTTC TTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGGGGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAATCCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTTAAGGGTTNGCTNGTCATGTTGGGGGACCAGCGCA ]
[+] EMBL AU108547 [ CAGAGAAGGAGTTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATNCCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTATTACATTATTGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCTCGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTGCTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTGTAAGAAATAAAGGAAGAAAGAAAAAATGTCCTTGTTGACGATTATTGCCTAAAAA]
consensusID : consensus_7119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[TGGATCCTTCCCTGAGAAGTATACCCCAGTTAATGGCTGGGTTTGCCTTTCGTGTTGTGGAGATAAGCTCCTTTGTGATTGGTGGAATGAGTGCCACCCTGGTGGTGGAGATGATGTGAAATTTGTTCGTGGATACCCCATAATGGACACCCGATTGGAAAATCATTGGCACAGCCCCCGTTCTGGAAGCTTTGTGTACCATTGTGCTGTGATGGCTGTTGACATACCACGGGCTATTACCTTATCGACTGTACATGCTTGACCCAAAGGAAGGATAAAAGAGCGCCAATTCTTCTGAGCTTGTTTAGTGATTTGTGCTTGATGGGTAATTTCTGGCCTTCTCTGGCAATGTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTGCTTACTTGCTTATGGTCTAAT]
[+] EMBL BI808600 [TGGATCCTTCCCTGAGAAGTATACCCCAGTTAATGGCTGGGTTTGCCTTTCGTGTTGTGGAGATAAGCTCCTTTGTGATTGGTGGAATGAGTGCCACCCTGGTGGTGGAGATGATGTGAAATTTGTTCGTGGATACCCCATAATGGACACCCGATTGGAAAATCATTGGCACAGCCCCCGTTCTGGAAGCTTTGTGTACCATTGTGCTGTGATGGCTGTTGACATACCACGGGCTATTACCTTATCGACTGTACATGCTTGACCCAAAGGAAGGATAAAAGAGCGCCAATTCTTCTGAGCTTGTTTAGTGATTTGTGCTTGATGGGTAATTTCTGGCCTTCTCTGGCAATGTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTGCTTACTTGCTTATGGTCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7119#0 CCAATAGAATACAAAAACAGCAGGTGAGGAGAGAGGAGAGAAAAAAAAACAGAGCTTTCT 60
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGG 120
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TGGTGGTGGTGGGCGCCGCCGGCGAGATGGGCCCGTAGGCGCCGGTGTGGGCGGCATCCT 180
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTT 240
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CTTTTCTTTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGG 300
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAAT 360
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTGAAGGGTTGGCTGGTCAT 420
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGT 480
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGG 540
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAA 600
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGA 660
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCT 720
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAA 780
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCG 840
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCC 900
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGC 960
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGC 1020
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAA 1080
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 CTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGG 1140
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATG 1200
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGG 1260
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGA 1320
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAA 1380
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGA 1440
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGG 1500
consensus_7119#1 ---------------------------------------------------------TGG 3
***
consensus_7119#0 ATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGG 1560
consensus_7119#1 ATCCTTCCCTGAGAAGTATACCCCAGTTAATGGCTGGGTTT--GCCTTTCGTG-TTGTGG 60
*** ** ************** *************** ** ** ******* ******
consensus_7119#0 AGATAAGCTCATT-GTGATTGGTGGAATGAGTGCA--CCTGGTGGTGGAG-TGAT-TGAA 1615
consensus_7119#1 AGATAAGCTCCTTTGTGATTGGTGGAATGAGTGCCACCCTGGTGGTGGAGATGATGTGAA 120
********** ** ******************** ************* **** ****
consensus_7119#0 ATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCA--GCCGCC 1673
consensus_7119#1 ATTTGTTCGTGGATACCCCATAATGGACA-CCCGATTGGAAAATCATTGGCACAGCCCCC 179
******** ********* ********** ** ******************* *** **
consensus_7119#0 GTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCA-GGGCTATT 1732
consensus_7119#1 GTTCTGGAAGCTTTGTGTACCATTGTGCTGTGATGG-CTGTTGACATACCACGGGCTATT 238
******************** *************** ************** ********
consensus_7119#0 ACATTATTGACTGTACAT-CTTGACCAAAAGGAAGGATAAAAGAG-GCAAATTCTTCTGA 1790
consensus_7119#1 ACCTTATCGACTGTACATGCTTGACCCAAAGGAAGGATAAAAGAGCGCCAATTCTTCTGA 298
** **** ********** ******* ****************** ** ***********
consensus_7119#0 GCTTGTTTAGTGATT-GTGCTCGATGGGTAATTTCTG-CCTTCTCTGGCATT--TTAGGC 1846
consensus_7119#1 GCTTGTTTAGTGATTTGTGCTTGATGGGTAATTTCTGGCCTTCTCTGGCAATGTTTAGGC 358
*************** ***** *************** ************ * ******
consensus_7119#0 TGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTT-CTTACTTGCTTATG-TCTAATCT 1904
consensus_7119#1 TGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTGCTTACTTGCTTATGGTCTAAT-- 416
************************************ ************** ******
consensus_7119#0 CTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGC 1964
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 GCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTC 2024
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 ATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTG 2084
consensus_7119#1 ------------------------------------------------------------
consensus_7119#0 TAAGAAATAAAGGAAGAAAGAAAAAATGTCCTTGTTGACGATTATTGCCTAAAAA 2139
consensus_7119#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||