These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2139 fasta sequence [CCAATAGAATACAAAAACAGCAGGTGAGGAGAGAGGAGAGAAAAAAAAACAGAGCTTTCTCTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGGTGGTGGTGGTGGGCGCCGCCGGCGA-GATGGGCCCGTAGGCGCCGGTGTGGGCGGCATCCTGTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTTCTTTTCTTTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGGGGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAATCCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTGAAGGGTTGGCTGGTCATGTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGTTGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGGGGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAATAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGATGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCTGGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAACCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCGCATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCCGTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGCTGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGCCCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAACTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGGTATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATGGACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGGTAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGAGGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAATGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGATTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTATTACATTATTGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCTCGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTGCTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTGTAAGAAATAAAGGAAGAAAGAAAAAATGTCCTTGTTGACGATTATTGCCTAAAAA] [+] EMBL AK070903 [CCAATAGAATACAAAAACAGCAGGTGAGGAGAGAGGAGAGAAAAAAAAACAGAGCTTTCTCTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGGTGGTGGTGGTGGGCGCCGCCGGCGA GATGGGCCCGTAGGCGCCGGTGTGGGCGGCATCCTGTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTTCTTTTCTTTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGGGGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAATCCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTGAAGGGTTGGCTGGTCATGTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGTTGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGGGGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAATAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGATGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCTGGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAACCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCGCATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCCGTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGCTGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGCCCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAACTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGGTATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATGGACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGGTAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGAGGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAATGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGATTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTATTACATTATTGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCTCGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTGCTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTGTAAGAAATAAAGGAAGAAAGAAAAAATGTC ] [+] EMBL AU062576 [ GAGCTTTCTCTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGGTGGTGGTGGTGGGCGCCGCCGG GAGGATGGGCCCGTA GCGCCGGTGTGGGCGGCATCCTGTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTTCTTTTC TTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGGGGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAATCCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTTAAGGGTTNGCTNGTCATGTTGGGGGACCAGCGCA ] [+] EMBL AU108547 [ CAGAGAAGGAGTTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATNCCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTATTACATTATTGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCTCGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTGCTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTGTAAGAAATAAAGGAAGAAAGAAAAAATGTCCTTGTTGACGATTATTGCCTAAAAA] consensusID : consensus_7119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [TGGATCCTTCCCTGAGAAGTATACCCCAGTTAATGGCTGGGTTTGCCTTTCGTGTTGTGGAGATAAGCTCCTTTGTGATTGGTGGAATGAGTGCCACCCTGGTGGTGGAGATGATGTGAAATTTGTTCGTGGATACCCCATAATGGACACCCGATTGGAAAATCATTGGCACAGCCCCCGTTCTGGAAGCTTTGTGTACCATTGTGCTGTGATGGCTGTTGACATACCACGGGCTATTACCTTATCGACTGTACATGCTTGACCCAAAGGAAGGATAAAAGAGCGCCAATTCTTCTGAGCTTGTTTAGTGATTTGTGCTTGATGGGTAATTTCTGGCCTTCTCTGGCAATGTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTGCTTACTTGCTTATGGTCTAAT] [+] EMBL BI808600 [TGGATCCTTCCCTGAGAAGTATACCCCAGTTAATGGCTGGGTTTGCCTTTCGTGTTGTGGAGATAAGCTCCTTTGTGATTGGTGGAATGAGTGCCACCCTGGTGGTGGAGATGATGTGAAATTTGTTCGTGGATACCCCATAATGGACACCCGATTGGAAAATCATTGGCACAGCCCCCGTTCTGGAAGCTTTGTGTACCATTGTGCTGTGATGGCTGTTGACATACCACGGGCTATTACCTTATCGACTGTACATGCTTGACCCAAAGGAAGGATAAAAGAGCGCCAATTCTTCTGAGCTTGTTTAGTGATTTGTGCTTGATGGGTAATTTCTGGCCTTCTCTGGCAATGTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTGCTTACTTGCTTATGGTCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7119#0 CCAATAGAATACAAAAACAGCAGGTGAGGAGAGAGGAGAGAAAAAAAAACAGAGCTTTCT 60 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CTCTCTCCCTCCCTCTCTCTCTCTCTTCTTCCAATCTGCGGCGCGAGGCGGAGGTGGTGG 120 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TGGTGGTGGTGGGCGCCGCCGGCGAGATGGGCCCGTAGGCGCCGGTGTGGGCGGCATCCT 180 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GTCCTCGCCGACCACCCGCCCCCGCCGGTGCGGCCTCGCCGGCAAGAAGTCTTTGTTTTT 240 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CTTTTCTTTTTTTTTTTTCATCTTTGAAGATTGGATCCTTAATTTAGGGGCGAAAAGAGG 300 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GGAGTTTGCAAGAGGAATCATCCCTATTGGGTTGTTTCTTGCTGCTGGGTAAGATCCAAT 360 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CCAGCCTCTAGGTTAGGTTTGTTTGCTGTTGGTGAGGAGATTGAAGGGTTGGCTGGTCAT 420 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGT 480 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGG 540 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAA 600 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGA 660 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCT 720 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAA 780 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCG 840 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCC 900 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGC 960 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGC 1020 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAA 1080 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 CTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGG 1140 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATG 1200 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGG 1260 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGA 1320 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAA 1380 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGA 1440 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGG 1500 consensus_7119#1 ---------------------------------------------------------TGG 3 *** consensus_7119#0 ATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGG 1560 consensus_7119#1 ATCCTTCCCTGAGAAGTATACCCCAGTTAATGGCTGGGTTT--GCCTTTCGTG-TTGTGG 60 *** ** ************** *************** ** ** ******* ****** consensus_7119#0 AGATAAGCTCATT-GTGATTGGTGGAATGAGTGCA--CCTGGTGGTGGAG-TGAT-TGAA 1615 consensus_7119#1 AGATAAGCTCCTTTGTGATTGGTGGAATGAGTGCCACCCTGGTGGTGGAGATGATGTGAA 120 ********** ** ******************** ************* **** **** consensus_7119#0 ATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCA--GCCGCC 1673 consensus_7119#1 ATTTGTTCGTGGATACCCCATAATGGACA-CCCGATTGGAAAATCATTGGCACAGCCCCC 179 ******** ********* ********** ** ******************* *** ** consensus_7119#0 GTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCA-GGGCTATT 1732 consensus_7119#1 GTTCTGGAAGCTTTGTGTACCATTGTGCTGTGATGG-CTGTTGACATACCACGGGCTATT 238 ******************** *************** ************** ******** consensus_7119#0 ACATTATTGACTGTACAT-CTTGACCAAAAGGAAGGATAAAAGAG-GCAAATTCTTCTGA 1790 consensus_7119#1 ACCTTATCGACTGTACATGCTTGACCCAAAGGAAGGATAAAAGAGCGCCAATTCTTCTGA 298 ** **** ********** ******* ****************** ** *********** consensus_7119#0 GCTTGTTTAGTGATT-GTGCTCGATGGGTAATTTCTG-CCTTCTCTGGCATT--TTAGGC 1846 consensus_7119#1 GCTTGTTTAGTGATTTGTGCTTGATGGGTAATTTCTGGCCTTCTCTGGCAATGTTTAGGC 358 *************** ***** *************** ************ * ****** consensus_7119#0 TGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTT-CTTACTTGCTTATG-TCTAATCT 1904 consensus_7119#1 TGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTGCTTACTTGCTTATGGTCTAAT-- 416 ************************************ ************** ****** consensus_7119#0 CTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGC 1964 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 GCAGCATTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTC 2024 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 ATGAAAGTTTTTTAGCTCCAGAGAGTAGGTTACATTGGCAAACCATTTGCCCATAGATTG 2084 consensus_7119#1 ------------------------------------------------------------ consensus_7119#0 TAAGAAATAAAGGAAGAAAGAAAAAATGTCCTTGTTGACGATTATTGCCTAAAAA 2139 consensus_7119#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||