cluster # 7138

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Oryza sativa
cluster # 7138 cluster # 7138 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7138#0 length = 428 sequences # 1

consensus_7138#1 length = 381 sequences # 3

consensusID : consensus_7138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT]

[+] EMBL CF195844             [NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT]




>consensus_7138#0
NNNNTNNNNNNNTTGTGCTTGTNNNTACCTCTAACCATATCATGTTATTTAATTTATATC
ACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTT
ACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTAC
TTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGT
GGGAATNNNNNAAATATAAAATGCCATATATAATATCCTCTATATTTTNNTTCATAGAGA
NNNTAGTTTCCATTNANTCCNNNNNNAAATATGGGTATNATCNNNNGNANTAATCTGGAA
GCNNNNNTGAATATGGATATTTTTTGCTGGATANNNNTACAAATACTATGACGTTGGNNN
NNNNGCTT

consensusID : consensus_7138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 381
fasta sequence

                              [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNANNNAATANNGNTATAATNNNN]

[+] EMBL CF195708             [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNANNNAATANNGNTATAATNNNN]
[+] EMBL CF195670             [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCAGGAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGTTCATNNNNNGTATAGNNNNCATTCACTCCCAANNAAAat              ]
[+] EMBL CF195684             [GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTCATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAGCATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCACAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTGGTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATGCCATATATAATATCCTCTATATTTTAGNNNNTNGNNNNNATAGTTTC                                  ]




>consensus_7138#1
GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTC
ATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG
CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA
CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG
GTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATG
CCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNA
NNNAATANNGNTATAATNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7138#0      -------------------------------------NNNNTNNNNNNNTTGTGCTTGTN 23
consensus_7138#1      GCCATGGAATGTTAGCATCTGATACATGGGCTTCTCATCTATAGACATGTTGTGCTTGTC 60
                                                               *       ********** 

consensus_7138#0      NNTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG 83
consensus_7138#1      ATTACCTCTAACCATATCATGTTATTTAATTTATATCACATGATTGAAAATGCATTTTAG 120
                        **********************************************************

consensus_7138#0      CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA 143
consensus_7138#1      CATGAATGACTCATAACGATTTAGAATTTTCTAACTTACAATTAGCAAACCATGGCAGCA 180
                      ************************************************************

consensus_7138#0      CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG 203
consensus_7138#1      CAATATGGTATTTCAAATTTTCATTTAGTTGCACTACTTGAGAATGAGTTTAGTGGTTTG 240
                      ************************************************************

consensus_7138#0      GTTGGATTGTCTNNGTGNNAATGTTGCTGTCATTTGTGGGAATNNNNNAAATATAAAATG 263
consensus_7138#1      GTTGGATTGTCTAAGTGCAAATGTTGCTGTCATTTGTGGGAATCNNNAAAATATAAAATG 300
                      ************  ***  ************************ *** ************

consensus_7138#0      CCATATATAATATCCTCTATATTTTNNTTCATAGAGANNNTAGTTTCCATTNANTCCNNN 323
consensus_7138#1      CCATATATAATATCCTCTATATTTTAGTTCATNNNNNNNATAGTTTCCATTCACTNNCNA 360
                      *************************  *****     ** *********** * *   * 

consensus_7138#0      NNNAAATATGGGTATNATCNNNNGNANTAATCTGGAAGCNNNNNTGAATATGGATATTTT 383
consensus_7138#1      NNNAA-TANNGNTATAATNNNN-------------------------------------- 381
                      ***** **  * *** ** ***                                      

consensus_7138#0      TTGCTGGATANNNNTACAAATACTATGACGTTGGNNNNNNNGCTT 428
consensus_7138#1      ---------------------------------------------