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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1453 fasta sequence
[TCCTTATTTTTACAAATTCTCACGTTCCATAACTTCCGGAACGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACAGATCTGACCTGTTCCACCTGTACACTCAAAACAAGACTTAAACCTAAGCCTAAGAACTCCAGAAATCTAGTTTACTCAAAATACCAAGGCTATTCTAACCACGATCAAAATGTATGCTAATGCATATCTAACTTTAATATATCTGCACTAGTCTGGAATACTCCTAGAAATTGGAGGAAAAGTTGCAGGTTTAGATCACTAGGCTGCCTCTCAAATTCAGAATGTGGCTGACCAACCATGAGATAAAAGGTGGCTTGTCAGCACCAAGCATTTCAGTGCCCTTGTAAGCCTATAAGTGATTACATTGCCCAGAATCTATCAGGGTCAGGGCTAAAGAGCGAATAATCTTGTATCTCCAGATTTGCTAAATGCCAATTGACGAATCCAGCTTGCAATGATTTGACAACAAAGAGGATAATAGGCAGTAT-CCACCATTCATTGTCTT-CCCTACTCTTAAAGCTTTTAGTGTTGAGTGCATGAGGAACGGAAGACACTGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATAATGTTTATGACAGAAGTAGTATTCCAAAGTGCAAAATACGGGTCACGGAAGATCTCTTTGGTCCTCGGCTGAAAAGTGCATTGAGACCAGCAAGAAAGGGAGACAGCAAAGCAAGGGGAGGAATAAGAAGTACAGCAAGGAATGCTCCAACAGATATCCAATAGTACTGCACAAGCATAAGCAGGGTGACGGAAAAATCACCCAGTAGTATAATACATATAAGCAGCTGCAAAGTTTCCGCATAACCAATGGGCCTACAATTTTGCAATAGCAATGAGAAAGGGAAAAGATAATCTCTTTTACATTCCAGTGATTTTAGTGTACCCTCATTGATTATCCCACCATTCACTCCACCTGTCAAACGCTTTCTAGAAACAGCATAGCTTGTGCAAGGCTGATCTTGATTTAGCTTCTTGGAACTGATGTTCTTCCTTGAGCGATCGATGAATTCTGAGACATGATCATGCTGATGAAGACTCTTATAGAAGTGCTCATTGACAGCAACAACAATACCTAGCTGATAATAACAAGAAGCAGTGGCTTGGAACCATCCTAACTCCACTCGAACACCATGCCGCTCAAGTTGGGGATTTCCATGACTATTAATCCAAGAAACAACAGGTCCCAAAGTTGATCGGATGTTCCCTT]
[+] EMBL CB629405 [TCCTTATTTTTACAAATTCTCACGTTCCATAACTTCCGGAACGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACAGATCTGACCTGTTCCACCTGTACACTCAAAACAAGACTTAAACCTAAGCCTAAGAACTCCAGAAATCTAGTTTACTCAAAATACCAAGGCTATTCTAACCACGATCAAAATGTATGCTAATGCATATCTAACTTTAATATATCTGCACTAGTCTGGAATACTCCTAGAAATTGGAGGAAAAGTTGCAGGTTTAGATCACTAGGCTGCCTCTCAAATTCAGAATGTGGCTGACCAACCATGAGATAAAAGGTGGCTTGTCAGCACCAAGCATTTCAGTGCCCTTGTAAGCCTATAAGTGATTACATTGCCCAGAATCTATCAGGGTCAGGGCTAAAGAGCGAATAATCTTGTATCTCCAGATTTGCTAAATGCCAATTGACGAATCCAGCTTGCAATGATTTGACAACAAAGAGGATAATAGGCAGTAT CCACCATTCATTGTCTT CCCTACTCTTAAAGCTTTTAGTGTTGAGTGCATGAGGAACGGAAGACACTGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATA ]
[-] EMBL CA765690 [ gcCAGTATCCCCCCATTCCATGTCTTCCCCTACTCTTAAAGC TTTAGTGTTGAGTGCATGAGGANCGGAAGACNCTGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATAATGTTTATGACAGAAGTAGTATTCCAAAGTGCAAAATACGGGTCACGGAAGATCTCTTTGGTCCTCGGCTGAAAAGTGCATTGAGACCAGCAAGAAAGGGAGACAGCAAAGCAAGGGGAGGAATAAGAAGTACAGCAAGGAATGCTCCAACAGATATCCAATAGTACTGCACAAGCATAAGCAGGGTGACGGAAAAATCACCCAGTAGTATAATACATATAAGCAGCTGCAAAGTTTCCGCATAACCAATGGGCCTACAATTTTGCAATAGCAATGAGAAAGGGAAAAGATAATCTCTTTTACATTCCAGTGATTTTAGTGTACCCTCATTGATTATCCCACCATTCACTCCACCTGTCAAACGCTTTCTAGAAACAGCATAGCTTGTGCAAGGCTGATCTTGATTTAGCTTCTTGGAACTGATGTTCTTCCTTGAGCGATCGATGAATTCTGAGACATGATCATGCTGATGAAGACTCTTATAGAAGTGCTCATTGACAGCAACAACAATACCTAGCTGATAATAACAAGAAGCAGTGGCTTGGAACCATCCTAACTCCACTCGAACACCATGCCGCTCAAGTTGGGGATTTCCATGACTATTAATCCAAGAAACAACAGGTCCCAAAGTTGATCGGATGTTCCCTT]
consensusID : consensus_7142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence
[TTTTTTTTTTTTTTAAATAAATCATAATATTCTACAAAATTCTCACGTTCCATAACTTCCGGAAAGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACCCCCTTGTCTCGTCCTCT]
[+] EMBL CA761137 [TTTTTTTTTTTTTTAAATAAATCATAATATTCTACAAAATTCTCACGTTCCATAACTTCCGGAAAGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACCCCCTTGTCTCGTCCTCT]
consensusID : consensus_7142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence
[GTGTACAGGTGGAACAGGTCAGATCTGTTGTACATTGTGTAAGTAATAGTGACCCTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGG]
[+] EMBL CF308366 [GTGTACAGGTGGAACAGGTCAGATCTGTTGTACATTGTGTAAGTAATAGTGACCCTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7142#0 ---------------------TCCTTAT-TTTTACAAA-TTCTCACGTTCCATAACTTCC 37
consensus_7142#1 TTTTTTTTTTTTTTAAATAAATCATAATATTCTACAAAATTCTCACGTTCCATAACTTCC 60
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 GGAACGTTTACAAGATAACCCACAAAGCTGCCTCCAGA-AAAACCCTTTTACTCTAAGAT 96
consensus_7142#1 GGAAAGTTTACAAGATAACCCACAAAGCTGCCTCCAGA-AAAACCCTTTTACTCTAAGAT 119
consensus_7142#2 -----------------------------GTGTACAGGTGGAACAGGTCAGATCTGTTGT 31
* * *** *** * *** *
consensus_7142#0 TCTTGCCACTAATTATCATGGCATTTTGTAAA--GAGTCCAG-GTATCGCTGACAAAATG 153
consensus_7142#1 TCTTGCCACTAATTATCATGGCATTTTGTAAA--GAGTCCAG-GTATCGCTGACAAAATG 176
consensus_7142#2 ACATTGTGTAAGTAATAGTGACCCTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAAAA 91
* * * * ** ** * ** *** * * ** *** *** * ****
consensus_7142#0 AACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCT 213
consensus_7142#1 AACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCT 236
consensus_7142#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 151
** ***** * *** ******* ** ** ** ** * *
consensus_7142#0 ACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACAGATCTGACCTGTTC 273
consensus_7142#1 ACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACCCCCTTGTCTCGTCC 296
consensus_7142#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGG------- 204
* ** ** * ** * * * * * ** * ** **
consensus_7142#0 CACCTGTACACTCAAAACAAGACTTAAACCTAAGCCTAAGAACTCCAGAAATCTAGTTTA 333
consensus_7142#1 TCT--------------------------------------------------------- 299
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 CTCAAAATACCAAGGCTATTCTAACCACGATCAAAATGTATGCTAATGCATATCTAACTT 393
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TAATATATCTGCACTAGTCTGGAATACTCCTAGAAATTGGAGGAAAAGTTGCAGGTTTAG 453
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 ATCACTAGGCTGCCTCTCAAATTCAGAATGTGGCTGACCAACCATGAGATAAAAGGTGGC 513
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TTGTCAGCACCAAGCATTTCAGTGCCCTTGTAAGCCTATAAGTGATTACATTGCCCAGAA 573
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TCTATCAGGGTCAGGGCTAAAGAGCGAATAATCTTGTATCTCCAGATTTGCTAAATGCCA 633
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 ATTGACGAATCCAGCTTGCAATGATTTGACAACAAAGAGGATAATAGGCAGTATCCACCA 693
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TTCATTGTCTTCCCTACTCTTAAAGCTTTTAGTGTTGAGTGCATGAGGAACGGAAGACAC 753
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATAATGTTTAT 813
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 GACAGAAGTAGTATTCCAAAGTGCAAAATACGGGTCACGGAAGATCTCTTTGGTCCTCGG 873
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 CTGAAAAGTGCATTGAGACCAGCAAGAAAGGGAGACAGCAAAGCAAGGGGAGGAATAAGA 933
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 AGTACAGCAAGGAATGCTCCAACAGATATCCAATAGTACTGCACAAGCATAAGCAGGGTG 993
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 ACGGAAAAATCACCCAGTAGTATAATACATATAAGCAGCTGCAAAGTTTCCGCATAACCA 1053
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 ATGGGCCTACAATTTTGCAATAGCAATGAGAAAGGGAAAAGATAATCTCTTTTACATTCC 1113
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 AGTGATTTTAGTGTACCCTCATTGATTATCCCACCATTCACTCCACCTGTCAAACGCTTT 1173
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 CTAGAAACAGCATAGCTTGTGCAAGGCTGATCTTGATTTAGCTTCTTGGAACTGATGTTC 1233
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TTCCTTGAGCGATCGATGAATTCTGAGACATGATCATGCTGATGAAGACTCTTATAGAAG 1293
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 TGCTCATTGACAGCAACAACAATACCTAGCTGATAATAACAAGAAGCAGTGGCTTGGAAC 1353
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 CATCCTAACTCCACTCGAACACCATGCCGCTCAAGTTGGGGATTTCCATGACTATTAATC 1413
consensus_7142#1 ------------------------------------------------------------
consensus_7142#2 ------------------------------------------------------------
consensus_7142#0 CAAGAAACAACAGGTCCCAAAGTTGATCGGATGTTCCCTT 1453
consensus_7142#1 ----------------------------------------
consensus_7142#2 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||