These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2308 fasta sequence [ATCGATGCGATTTCAGCAGCCGTCGTCGTTGATTCGGATTCGGGGAGTAACCGCGCAAGAGCAGCGACGATGAGGTTCGGTTTCCGTCTCCGATTTCCCTTGGGGTTCCATCCCCTTCAAATTTAACGCGACCCTTCACTCCCCGTCGCATCGCATCTTGGCTGACTCGTCCCGAAAATCTTGAGCGACCGAGTTACCGGCGGCGGAGATGGTGGTGGCTGACAATGGCAAGTGGGCGCTGGAGAAGGCTCGGGCGCTGCAAGATTTGGAGGAGGAATTCAACCAACAGATTGCAAGGATTCTCAGCTGCTACCAGCTACCTGACCACATCAGGCTGGATCTCCATGAGCAGCACCGCAATGACTACAAGGTGCCTGACGATCTCCGGCTCAAGTTCGTGAATGCCGTTTTCGAGGGGAAATCCGGGATGCTTGATCAAGACGAGGAACTCAGGGTTCAGGCTCGGAAGGAATCCGAGAAGTTTTGGGTGGAGGCGGCGGGGGCGGCGAAGAAGGCGCAAGCACTACAAGACATGGAAGAGAGAAACAGGCAATTGTTCTTTAAGCATTATCCTGGCGTGCAAGACATGCCTGACCACATTAGGGAGTACTGCTTCAGGAAATTCATGGAAGATGCCAGGGATGAGGTAGAGGTCAGATTCGGGATACGTAATCACGAAATGCGACTCAGGATCCGAGCTTGGGAGGAATCGCAGCAGTTTCTGATCAAGACAATGGCCGATGGGCGGGCAGCCAAGAAAGTGCAGACCTTGCAAGATGAGGAGAAGAGATATGTTCAGGGTGTTAAGAAAACTTTTGACAGCGAAAACATATCTGAGTACTTCCAACAGGCCTTCCTCCAGCAAGGCCTACTTGATAATATCCGGCTGCTTTTCATAGATGATATAGAGGAGAAATTCAATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTCGGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCAACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCAGGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGCTGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCGCAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGCGAAGAA-GGCACAAGCACTACAAGATTTGGAAGAGAGATACAAGCAACAATTTATTAAGCCTAGTTATGACAGGGAAGACATATCTGAGCACATGCAGGAGTATTTCCTCAGGGAAAGAAAGATAACTGACAAGGCCTATCTCGAGTACAAGAATAATGTAGAGGATAAATTCGCGATACGTAACCACGAAATGCAATTGAAGTTTCTAGCCTGGGAGAAAACACAGCAGTTTCGGATTAAGATGATGGCTGATGAGCGGGCGGCGAAGAAGGTGAAGGCCCTGCAAGATATGGAGGAGAGATATGTTCAAGATTATATCAACAAGGTTGAAAGACTAGATGTACCTGACTACATCAAGCAGGGCGTTATCCAGGAATACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGATGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGACTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACAGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAAAACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGTGTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTTTTGATAGAGCAGAAAATTTAAAAAAAAAAAA] [+] EMBL AK100556 [ATCGATGCGATTTCAGCAGCCGTCGTCGTTGATTCGGATTCGGGGAGTAACCGCGCAAGAGCAGCGACGATGAGGTTCGGTTTCCGTCTCCGATTTCCCTTGGGGTTCCATCCCCTTCAAATTTAACGCGACCCTTCACTCCCCGTCGCATCGCATCTTGGCTGACTCGTCCCGAAAATCTTGAGCGACCGAGTTACCGGCGGCGGAGATGGTGGTGGCTGACAATGGCAAGTGGGCGCTGGAGAAGGCTCGGGCGCTGCAAGATTTGGAGGAGGAATTCAACCAACAGATTGCAAGGATTCTCAGCTGCTACCAGCTACCTGACCACATCAGGCTGGATCTCCATGAGCAGCACCGCAATGACTACAAGGTGCCTGACGATCTCCGGCTCAAGTTCGTGAATGCCGTTTTCGAGGGGAAATCCGGGATGCTTGATCAAGACGAGGAACTCAGGGTTCAGGCTCGGAAGGAATCCGAGAAGTTTTGGGTGGAGGCGGCGGGGGCGGCGAAGAAGGCGCAAGCACTACAAGACATGGAAGAGAGAAACAGGCAATTGTTCTTTAAGCATTATCCTGGCGTGCAAGACATGCCTGACCACATTAGGGAGTACTGCTTCAGGAAATTCATGGAAGATGCCAGGGATGAGGTAGAGGTCAGATTCGGGATACGTAATCACGAAATGCGACTCAGGATCCGAGCTTGGGAGGAATCGCAGCAGTTTCTGATCAAGACAATGGCCGATGGGCGGGCAGCCAAGAAAGTGCAGACCTTGCAAGATGAGGAGAAGAGATATGTTCAGGGTGTTAAGAAAACTTTTGACAGCGAAAACATATCTGAGTACTTCCAACAGGCCTTCCTCCAGCAAGGCCTACTTGATAATATCCGGCTGCTTTTCATAGATGATATAGAGGAGAAATTCAATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTCGGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCAACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCAGGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGCTGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCGCAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGCGAAGAA GGCACAAGCACTACAAGATTTGGAAGAGAGATACAAGCAACAATTTATTAAGCCTAGTTATGACAGGGAAGACATATCTGAGCACATGCAGGAGTATTTCCTCAGGGAAAGAAAGATAACTGACAAGGCCTATCTCGAGTACAAGAATAATGTAGAGGATAAATTCGCGATACGTAACCACGAAATGCAATTGAAGTTTCTAGCCTGGGAGAAAACACAGCAGTTTCGGATTAAGATGATGGCTGATGAGCGGGCGGCGAAGAAGGTGAAGGCCCTGCAAGATATGGAGGAGAGATATGTTCAAGATTATATCAACAAGGTTGAAAGACTAGATGTACCTGACTACATCAAGCAGGGCGTTATCCAGGAATACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGATGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGACTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACAGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAAAACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGTGTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTT ] [+] EMBL OSC18391 [ AATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTCGGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCAACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCAGGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGCTGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCGCAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGC AAGAAGGGCACAAGCACTACAAGATTTGGAAGAGAG ] [-] EMBL CA761099 [ AATACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGATGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGATCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGATCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGGCGGCTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGACCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAATGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGTGCTATTTAACGGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAACTCGTTCCATCCCTATGTGGAAACACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTTTGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGTGTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTTTTGATAGAGCAGAAAATTTAAAAAAAAAAAA] consensusID : consensus_7146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CGTTACTCGTAAAGCNCCCTTTCTCCCCCTCCCCCTTTNNAAGATGAGGAACCTCCACAACCTCACAAAAACTTTTGTTCCCGAACCCCCCTTTGGGTCGCGGTATCGATAATCTTGCATAGTAGGAGAGCACACGGGGCATACGGCGGAGCAGAATGCTCAAGATTATATCAACAAGGTTGAAAGACTAGATGCCCCTGACTACATCAAGCACGGCCGTTATCCCAGGATTCCAG] [+] EMBL CA765824 [CGTTACTCGTAAAGCNCCCTTTCTCCCCCTCCCCCTTTNNAAGATGAGGAACCTCCACAACCTCACAAAAACTTTTGTTCCCGAACCCCCCTTTGGGTCGCGGTATCGATAATCTTGCATAGTAGGAGAGCACACGGGGCATACGGCGGAGCAGAATGCTCAAGATTATATCAACAAGGTTGAAAGACTAGATGCCCCTGACTACATCAAGCACGGCCGTTATCCCAGGATTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7146#0 ATCGATGCGATTTCAGCAGCCGTCGTCGTTGATTCGGATTCGGGGAGTAACCGCGCAAGA 60 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GCAGCGACGATGAGGTTCGGTTTCCGTCTCCGATTTCCCTTGGGGTTCCATCCCCTTCAA 120 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 ATTTAACGCGACCCTTCACTCCCCGTCGCATCGCATCTTGGCTGACTCGTCCCGAAAATC 180 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TTGAGCGACCGAGTTACCGGCGGCGGAGATGGTGGTGGCTGACAATGGCAAGTGGGCGCT 240 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GGAGAAGGCTCGGGCGCTGCAAGATTTGGAGGAGGAATTCAACCAACAGATTGCAAGGAT 300 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TCTCAGCTGCTACCAGCTACCTGACCACATCAGGCTGGATCTCCATGAGCAGCACCGCAA 360 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TGACTACAAGGTGCCTGACGATCTCCGGCTCAAGTTCGTGAATGCCGTTTTCGAGGGGAA 420 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 ATCCGGGATGCTTGATCAAGACGAGGAACTCAGGGTTCAGGCTCGGAAGGAATCCGAGAA 480 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GTTTTGGGTGGAGGCGGCGGGGGCGGCGAAGAAGGCGCAAGCACTACAAGACATGGAAGA 540 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GAGAAACAGGCAATTGTTCTTTAAGCATTATCCTGGCGTGCAAGACATGCCTGACCACAT 600 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TAGGGAGTACTGCTTCAGGAAATTCATGGAAGATGCCAGGGATGAGGTAGAGGTCAGATT 660 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 CGGGATACGTAATCACGAAATGCGACTCAGGATCCGAGCTTGGGAGGAATCGCAGCAGTT 720 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TCTGATCAAGACAATGGCCGATGGGCGGGCAGCCAAGAAAGTGCAGACCTTGCAAGATGA 780 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GGAGAAGAGATATGTTCAGGGTGTTAAGAAAACTTTTGACAGCGAAAACATATCTGAGTA 840 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 CTTCCAACAGGCCTTCCTCCAGCAAGGCCTACTTGATAATATCCGGCTGCTTTTCATAGA 900 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TGATATAGAGGAGAAATTCAATATGCCTGATGACGAAGAGGAACCTAAGGGTTACATTTC 960 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GGAGGATTACAACAGGTTGAAGGCGCAGGCCTTACAAGATTTGGAGTACAAATTCAACCA 1020 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 ACAGACTGCAAGGATTCTCAAGCGTTATGACCTACCCGAGCACATCAGGCTGGATCTCCA 1080 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GGAGCAACACTACAACAACTACAAGGTGCCTGACAATCTCCGGATCAAGTTCATAAATGC 1140 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TGTTTTCAATGGAAATCCCCGGATACTTGATCACAAGAGGGAGCTCAAGGTCCAGGCTCG 1200 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 CAAAGAAGCAGAAAAGTTTTGGATCGAGGCGGCGGCGACAGCGAAGAAGGCACAAGCACT 1260 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 ACAAGATTTGGAAGAGAGATACAAGCAACAATTTATTAAGCCTAGTTATGACAGGGAAGA 1320 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 CATATCTGAGCACATGCAGGAGTATTTCCTCAGGGAAAGAAAGATAACTGACAAGGCCTA 1380 consensus_7146#1 ------------------------------------------CGTTACTCGTAAAGCNC- 17 * *** ** ** consensus_7146#0 TCTCGAGTACAAGAATAATGTAGAGGATAAATTCGCGATACGTAACCACGAAATGCAATT 1440 consensus_7146#1 CCTTTCTCCCCCTCCCCCTTTNNAAGATGAG----------GAACCTCCACAACCTCACA 67 ** * * * * *** * * * * * ** * consensus_7146#0 GAAGTTTCTAGCCTGGGAGAAAACACAGCAGTTTCGGATTAAGATGATGGCTGATGAGCG 1500 consensus_7146#1 AAAACTTTTGTTCCCG-----AACCCCCC---TTTGGGTCGCGGTA----TCGATAATCT 115 ** ** * * * *** * * ** ** * * * *** * * consensus_7146#0 GGCGGCGAAGAAGGTGAAGGCCCTGCAAGATATGGAGGAGAGATATGTTCAAGATTATAT 1560 consensus_7146#1 TGCATAGTAGGAG----AGCACACGGGGCATACGGCGGAGCAGAATGCTCAAGATTATAT 171 ** * ** ** ** * * *** ** **** *** ************ consensus_7146#0 CAACAAGGTTGAAAGACTAGATGTACCTGACTACATCAAGCAGGGC-GTTATCCAGGAAT 1619 consensus_7146#1 CAACAAGGTTGAAAGACTAGATGCCCCTGACTACATCAAGCACGGCCGTTATCCCAGGAT 231 *********************** ***************** *** ******* * ** consensus_7146#0 ACAAGGTACCTGACGGTACCCGACTACGTTACATAAATTATATCGAGGAGAAATTCAGGA 1679 consensus_7146#1 TCCAG------------------------------------------------------- 236 * ** consensus_7146#0 TGCTTGATGACCAAGAGGAACGTAAGGTTCACATTTGGGAGAATTTCAAAAAGTTGAAGA 1739 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TCCCTCTCACAATAAAGTCTCCCATCACTGTCGCTATCATGTTCTCGATTGGCATCATGA 1799 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TCTTGTTCTCCGGCTTCCTTGTCCCCAAGATGCCCAAATCGTTGAAGATCATGTGTTGGG 1859 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 CGACTTCAATTGTCATCTGCTTTGCGGCCGTGCTCAGCTACGATAATGAAAGCTCGAAGA 1919 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 CCACTGCCCCAACTGAAATGCATGATCTGGAAAATCCTCCAAGTATTTAATACTGAATAA 1979 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TGCCATTTAACTGGCATACAGTTCCATCCCTGTGTAATCTATTGTTAGATAGGAAATAGT 2039 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GCTATTTAACAGATCGGTTAGTAATAAGAACTTGTTAGTAATAAGAAGTCATCTGAGAAC 2099 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TCGTTCCATCCCTATGTGGAAAAACAAGTTCTTTTTTATTTGGAAGGTAAACAAGTTCTT 2159 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 TGTTCTAGTGCTTTAAGTCTAGCTGTTTACAGTCTTGTGCTTGAAATTTTAGACTTCAGT 2219 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GTATTTCTATATGCTATGAGCCTGTTAATGACATACTATCAGACTGATGAAAGATGTTTT 2279 consensus_7146#1 ------------------------------------------------------------ consensus_7146#0 GATAGAGCAGAAAATTTAAAAAAAAAAAA 2308 consensus_7146#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||