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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2115 fasta sequence
[CGCCTTCCTTCCTCTTCCACCCAAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCCTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAGCACTCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCC-CACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAAGAGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGTAATCAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTGAGTTCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCAAAGGTGTTCTCCACCCCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAGGTGGTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGATAGCATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAGAGGCAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTTTCAGGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGACAGTAGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCGGTTCGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGCTATGGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAATGATTTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCAGATGAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGTTGCAATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGTCATTATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGAATGAGGTGAATTTTTGTACTAAATGGTGATATCCTCATTGTATGCACTGATCAGTCAATATTAAAGTACAGTGACATTTTTTTTCAAGAAAAAGAGAAGTGAGATAGGAGTAGTTCTCTTCAAAAAAAACAAAAA]
[+] EMBL CF313885 [CGCCTTCCTTCCTCTTCCACCCAAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCCTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAGCACTCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCC CACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAA ]
[+] EMBL AK102141 [ CGGCGAGCAGCAGCCGGCGAGGCAGGATGAACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGGGGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAGGCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAATTCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCCCTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCTTCTCCACGCGGATCGGCGAGACAAGAATCAGGAAGCACCCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACCCGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCCACACGGATCGTCGAGACAAGAAGCAAGAAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGACAAGAGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGTAATCAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTGAGTTCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCAAAGGTGTTCTCCACCCCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAGGTGGTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGATAGCATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAGAGGCAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTTTCAGGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGACAGTAGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCGGTTCGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGCTATGGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAATGATTTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCAGATGAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGTTGCAATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGTCATTATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCA ]
[-] EMBL CF313886 [ TGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCAGTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGAATGAGGTGAATTTTTGTACTAAATGGTGATATCCTCATTGTATGCACTGATCAGTCAATATTAAAGTACAGTGACATTTTTTTTCAAGAAAAAGAGAAGTGAGATAGGAGTAGTTCTCTTCAAAAAAAACAAAAA]
consensusID : consensus_7156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[AGAGGACGAGACAACGGGGGGTTGCTGACCGTGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAAAACCCATGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGA]
[-] EMBL CA760914 [AGAGGACGAGACAACGGGGGGTTGCTGACCGTGCTGGTTCTGTTCTTATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCAGCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGGTGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTGTTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTAGACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAAAACCCATGTCTTCCGATAGATAGTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAGCAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTTGCATGCAATGCAATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7156#0 CGCCTTCCTTCCTCTTCCACCCAAGCGGCGCGGCGAGCAGCAGCCGGCGAGGCAGGATGA 60
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 ACCTGGCGCAGTGTCGCGTCCAGATTCATAGGCCGCGCCGACCTATAAGTACACTCGCGG 120
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GGCACGCTCTCTCTCTCTCCGAGGATTGCGGTTGCAAGCAGGATAAACGGCCACCGGTAG 180
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GCGTCGGCGGAGAGGAGAGGAGCAAGAGAGGGTGGGAAGGAGAGGCACCTCCGGATTAAT 240
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 TCCTCCGCGGGAGCTGGATATTGTGAGGGAATCGAGCGATCGAGTCGTCGTCGTCTTCCC 300
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 CTGAGCAATCCGGACGCACGCGCCCCCCGCCTGTTCTGCTTCCATCCTCTCCACGCGGAT 360
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 CGGCGAGACAAGAATCAGGAAGCACTCAGCGATTGAGTCGTCATCTTTCCCTGAGCAACC 420
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 CGGAGTGCCCCACCTATTCTGCTTCCTCTTCTCCCACGGATCGTCGAGACAAGAAGCAAG 480
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AAGCATCCAGATATGGCACCAAGAGGAAAGCCTTGGAAGCATTGTTGCAACAAGTGCGAC 540
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AAGAGCTTCCGTTCAGGGAATGCTCTTGGAGGCCACATGTCCTGCCACAGGAGTGTTGGT 600
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AATCAGCCAAAGAGCACGTCAAGCCCACCCACTGTTGTTGATCTGCACATGCCACTGCTG 660
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AGTTCCTGTGATGATAATCTTTTGCTTTTGCCCCCAGAAACACAATGCCAGATGTGCTCA 720
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AAGGTGTTCTCCACCCCCGGATCGCTGAGGGAGCACATGATGATGCACGGTGGGGAGAAG 780
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GTGGTGGTCAAGGCTGAGGAAGAAGCTGCCGGGCTGATTGAAGCACTGGGCATTGCTGAT 840
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AGCATGCAAGATGTAATGGTGTTTTCTTCAGTGAAGCGTAAGCGATCATTCCGATCAAAG 900
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AGGCAGACACCAGCACTCAGTTTGGAGGAGATAGAGGCTGCAGATGCTCTCCTACTGCTT 960
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 TCAGGGTGCTTTGACAAGACTTCAGCTTATGAGGATTGCTATCTGGGAGATATAGAAGAC 1020
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 AGTAGCTTGAGATCCATTGTGCTGACAGAGGTTAACATGAATGCCGTGGATCGTTGTTCG 1080
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GTTCGATCTGTTGGCTCCAAGGAGCCAATAAATGATAATAACTCAGGTTACAAGGATTGC 1140
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 TATGGACAAAGTGACAAGGAAAACTGTTTGATCGTTCCCAAGGAGGAGATGGATCCAAAT 1200
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GATTTTGATCATGAGCTGGTTAGAGATGCTGCTCTCAGGAAACCAAGAACCGACAATTCA 1260
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 GATGAGGAGATGAAGTTTGGTGATCTTCCAGCTGCTGCTATGAAGGACAACAGCCACCGT 1320
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 TGCAATACCTGCGGAAAGTCATTTGGATCAGGGCAGGCACTGGGAGGCCACATGCGACGT 1380
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 CATTATGTTCGGAAGTGCAATCGTCAACGGGGGGTTGCTGACCACGCTGGTTCTGTTCTT 1440
consensus_7156#1 -------------AGAGGACGAGACAACGGGGGGTTGCTGACCGTGCTGGTTCTGTTCTT 47
** * * * ******************* ***************
consensus_7156#0 ATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCA 1500
consensus_7156#1 ATGAAAGTGCAAAAGCTGAAGCTTAGATTGGACCCCATCTTGTTTGATGTCACACTTCCA 107
************************************************************
consensus_7156#0 GCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGG 1560
consensus_7156#1 GCTCTCACTGATGGAGACTGCTGCATTTCTGTGGGTGTGAAGCCTGAACCTCAGCTGTGG 167
************************************************************
consensus_7156#0 TGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTG 1620
consensus_7156#1 TGTGTCACGAGCAATCTTCAGTGAACCAATCCGGTGCTCGATGTGGTCTGAAACTCTCTG 227
************************************************************
consensus_7156#0 TTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTA 1680
consensus_7156#1 TTCTTTTGGTGAAATCTGGGGTGTTGTCTGAAACTGGTACAGTTCCTTGAGCTGTCTGTA 287
************************************************************
consensus_7156#0 GACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAACCCATGTTGTCTTCCGATAGATA 1740
consensus_7156#1 GACTGTAGGTAGTTCATCAGCCAGGAAGCAAAAAAAAAACCCAT-GTCTTCCGATAGATA 346
************************************* * * ***************
consensus_7156#0 GTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAG 1800
consensus_7156#1 GTCACAAGCTCACAATACTGATAGGAGTAGTTCTCTTGACTGACAAACTTCCATGGATAG 406
************************************************************
consensus_7156#0 CAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTT 1860
consensus_7156#1 CAAAGGCCAGGATCTTGAGTGATAGCTTGGTTACTGAACAGTGAAGCTGATTTCCATGTT 466
************************************************************
consensus_7156#0 GCATGCAATGCAATGGACGAGCTTGTCATTTTTTTTTTGTACCAACAATCTGTAAAATCA 1920
consensus_7156#1 GCATGCAATGCAATGGA------------------------------------------- 483
*****************
consensus_7156#0 GTTTTGCTTTGCTTTCTGTAAATGTCTGTACCTTGATTCTTGAAAGGAATGCTGGTCAGA 1980
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 ATGAGGTGAATTTTTGTACTAAATGGTGATATCCTCATTGTATGCACTGATCAGTCAATA 2040
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 TTAAAGTACAGTGACATTTTTTTTCAAGAAAAAGAGAAGTGAGATAGGAGTAGTTCTCTT 2100
consensus_7156#1 ------------------------------------------------------------
consensus_7156#0 CAAAAAAAACAAAAA 2115
consensus_7156#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||