These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1198 fasta sequence [ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAAACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCCTCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTCCTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAGGCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGGGCGCCGGGGCACAGCCGT-GCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACCACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATGCTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATGTCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAGCTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTTCGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG] [+] EMBL AK066874 [ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAAACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCCTCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTCCTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAGGCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGGGCGCCGGGGCACAGCCGT GCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACCACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATGCTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATGTCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAGCTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTTCGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATG ] [+] EMBL AK061845 [ TTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTCCTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAGGCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGGGCGCCGGGGCACAGCCGTGGCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACCACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATGCTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATGTCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAGCTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTTCGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCT ] [+] EMBL AU225185 [ gccgctTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG] consensusID : consensus_7159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [TGGCAGGATCAGTTAGCCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGGAANAGGAACTGAATTNCGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGAATCGGTGGATGGGTGTAATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAATCACTTGTCTGTTTTGTTANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97787 [TGGCAGGATCAGTTAGCCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGGAANAGGAACTGAATTNCGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGAATCGGTGGATGGGTGTAATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAATCACTTGTCTGTTTTGTTANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7159#0 ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAA 60 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 ACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCC 120 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 TCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTC 180 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 CTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAG 240 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 GCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGG 300 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 GCGCCGGGGCACAGCCGTGCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGG 360 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 CCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGA 420 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 AGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTT 480 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 TGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAA 540 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 AGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACC 600 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 ACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATG 660 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAG 720 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 AGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACC 780 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 CAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATG 840 consensus_7159#1 ------------------------------------------------------------ consensus_7159#0 TCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAG 900 consensus_7159#1 --------------------------------------------TGGCAGGATCAGTTAG 16 **************** consensus_7159#0 CTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTT 960 consensus_7159#1 CCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGGAANAGGAACTGAATTN 76 * * ************************************* **** ************ consensus_7159#0 CGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGT 1020 consensus_7159#1 CGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGAATCGGTGGATGGGTGT 136 ** ********************************** ********************** consensus_7159#0 AATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGT 1080 consensus_7159#1 AATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAATCACTTGTCTGTTTTGT 196 ***** ***************** *************** ******************** consensus_7159#0 TAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAA 1140 consensus_7159#1 TANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAA 256 ** ********************************************************* consensus_7159#0 TTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG 1198 consensus_7159#1 TTAATACAAAAAAAAAAAAAAAAAAAAAA----------------------------- 285 ********** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||