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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2085 fasta sequence
[CCCGAGGATGGAAGACAAGCGTCTTCTTCGTCTTCCTCGCTTGTTCTCTGCCTGCCCCTGCCTAGCTTAATGTGGAACTAACTAGGAGTATTAATTAATTCCTTCCACTAATTACCAAGCGGCAATCGGCGGCCACGGCCAGTGAGGTCACCGTCCGCTCCGACGACGACAAGCTGCCACTGCTCACTGCTCTCTCGAGTCTGGAAGCAGGCGTTGCTCGGCTTCTCTCACTATGAAGGGCCACCATTCCTTGCCGCCGTCGACGCCGCCCAAGCGCCGCTGCACTGCCCTGGCCGCCGCCGTCCCGGCGCTCGTCGTCTGCTCCATCCTCCTGCCCCTCGTCTTCCTCCTCGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTGTCATCAGCACTGAATTAGGGTTTAGCAAGCACAAGCATCTGGATGGGAGAATGAAGCACAAGCTACTCAAGGATGTTTCTAGAAAGAAAATTCCTGGATCTGATGGGATTTTGGATGAGAAATCTGGTAGTAGATCAAAGTCCAAGAGTGTTTCTACCAAATCAAAAGAAAAGCTCAAGGGTGTTTTCTCTTTAGTTCAGCTAAAAAATGAGACCAGAAAAAACAAAGAACTTCATACACAAAGAAGATACCAGTTAAAGGACTTATCCTGGAGATCAAAGGATACTACTATTGATAAGAAAGAGAACCAAGACCAAGAAGTCGAGCATGAGAACCCCAGATCCTGTGAACTTGAATATGGTAGCTACTGCCTCTGGTCTGTTGAGTATAAGGAAGTGATGAAAGATTTTATTGTGAAGAGGCTTAAGGATCAACTTTTCATGGCAAGAGCTCACTATCCTAGTATTGCAAAGCTGAAGAACCAGGAAACATTTACACGTGAACTGAAACAAAACATCCAAGAGCATGAACGCATGCTCAGTGACACCATTGCAGATGCTGATCTTCCACCATTTTTTGCAAAGAAGCTAGAGAAAATGGAGCGCACAATTGAAAGAGCCAAGTCTTGTGAAGTCGGCTGCACAAGTGTTGAACGGAAACTTAGGCAGCTACTTGATATAACTGAAGATGAAGCTTATTTCCATACAAGGCAGAGTGCATTTCTCTATCATCTTGGGGTACAAACTATGCCAAAAACTCACCATTGCTTGAACATGAGATTGACAGTAGAATATTTCAAATCAACGTCTATTCATACGGTCCAGTCAAACAAGCAGAAACTTGAAGACCCCACCTTCCATCACTATGTGATATTCTCCAAGAATGTGCTTGCAGTTTCGACTACAATTAATTCAACGGTTATGAACTCCAAGGATTCTGGTAGCATTGTTTTCCATTTGTTCACCGATTCACAAAATTTTTATGCGATGAAGCATTGGTTTGACAGAAATATGTATTTGGAAGCAACTGTACATGTAACTGACATTGA-GGATCACCAGAAGCTCTCTAA-GGATGTTGATTTTCATGATATGAAAC-TGTTACGACCTGCTGAGGAATTCCGTGTCAC-GTTCCGTAATCATTATCAATCTTTCCAGAAGCAAATGAAAACTGAGTACATTTCTACTTTTGGCCATTCACATTTCCTCCTGCCTGACCTTCTTCCTAGCTTGAATAGAGTTGTAGTTCTAGATGATGATTTGATTGTCCAGAAAGACTTGTCATCTCTGTGGAACCTCAATATGGGAGGTAAAGTGGTGGGAGCTATTCAGTTCTGTGAAGTTAAATTAGGACAATTGAAGGCTTACACCGAGGAACGTAATTTTGGCACCAATTCATGTGTGTGGTTATCTGGTCTGAATGTTGTTGAACTGAAAAAATGGAGGGATCTCCACATTACCAGTCGGTATGATCAATTGCTTCAAAAGTTGCAAAAGGACAGTGTGACATCATTTCCACTTAAAGTACTTCCCATAAGCTTACTTGTCTTTCAAGATTTGATATATCCTTTGGAAGATTCATGGGTCCAATCAGGTCTTGGACATGATNTATGGAGTTAGTCAAACCGATATAAAAGGTCTGTTACTCTACACTACAATGGTGTCATGAAACCTTGGCTTGATTTGGGCAT]
[+] EMBL AK105411 [CCCGAGGATGGAAGACAAGCGTCTTCTTCGTCTTCCTCGCTTGTTCTCTGCCTGCCCCTGCCTAGCTTAATGTGGAACTAACTAGGAGTATTAATTAATTCCTTCCACTAATTACCAAGCGGCAATCGGCGGCCACGGCCAGTGAGGTCACCGTCCGCTCCGACGACGACAAGCTGCCACTGCTCACTGCTCTCTCGAGTCTGGAAGCAGGCGTTGCTCGGCTTCTCTCACTATGAAGGGCCACCATTCCTTGCCGCCGTCGACGCCGCCCAAGCGCCGCTGCACTGCCCTGGCCGCCGCCGTCCCGGCGCTCGTCGTCTGCTCCATCCTCCTGCCCCTCGTCTTCCTCCTCGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTGTCATCAGCACTGAATTAGGGTTTAGCAAGCACAAGCATCTGGATGGGAGAATGAAGCACAAGCTACTCAAGGATGTTTCTAGAAAGAAAATTCCTGGATCTGATGGGATTTTGGATGAGAAATCTGGTAGTAGATCAAAGTCCAAGAGTGTTTCTACCAAATCAAAAGAAAAGCTCAAGGGTGTTTTCTCTTTAGTTCAGCTAAAAAATGAGACCAGAAAAAACAAAGAACTTCATACACAAAGAAGATACCAGTTAAAGGACTTATCCTGGAGATCAAAGGATACTACTATTGATAAGAAAGAGAACCAAGACCAAGAAGTCGAGCATGAGAACCCCAGATCCTGTGAACTTGAATATGGTAGCTACTGCCTCTGGTCTGTTGAGTATAAGGAAGTGATGAAAGATTTTATTGTGAAGAGGCTTAAGGATCAACTTTTCATGGCAAGAGCTCACTATCCTAGTATTGCAAAGCTGAAGAACCAGGAAACATTTACACGTGAACTGAAACAAAACATCCAAGAGCATGAACGCATGCTCAGTGACACCATTGCAGATGCTGATCTTCCACCATTTTTTGCAAAGAAGCTAGAGAAAATGGAGCGCACAATTGAAAGAGCCAAGTCTTGTGAAGTCGGCTGCACAAGTGTTGAACGGAAACTTAGGCAGCTACTTGATATAACTGAAGATGAAGCTTATTTCCATACAAGGCAGAGTGCATTTCTCTATCATCTTGGGGTACAAACTATGCCAAAAACTCACCATTGCTTGAACATGAGATTGACAGTAGAATATTTCAAATCAACGTCTATTCATACGGTCCAGTCAAACAAGCAGAAACTTGAAGACCCCACCTTCCATCACTATGTGATATTCTCCAAGAATGTGCTTGCAGTTTCGACTACAATTAATTCAACGGTTATGAACTCCAAGGATTCTGGTAGCATTGTTTTCCATTTGTTCACCGATTCACAAAATTTTTATGCGATGAAGCATTGGTTTGACAGAAATATGTATTTGGAAGCAACTGTACATGTAACTGACATTGA GGATCACCAGAAGCTCTCTAA GGATGTTGATTTTCATGATATGAAAC TGTTACGACCTGCTGAGGAATTCCGTGTCAC GTTCCGTAATCATTATCAATCTTTCCAGAAGCAAATGAAAACTGAGTACATTTCTACTTTTGGCCATTCACATTTCCTCCTGCCTGACCTTCTTCCTAGCTTGAATAGAGTTGTAGTTCTAGATGATGATTTGATTGTCCAGAAAGACTTGTCATCTCTGTGGAACCTCAATATGGGAGGTAAAGTGGTGGGAGCTATTCAGTTCTGTGAAGTTAAATTAGGACAATTGAAGGCTTACACCGAGGAACGTAATTTTGGCACCAATTCATGTGTGTGGTTATCTGGTCTGAATGTTGTTGAACTGAAAAAATGGAGGGATCTCCACATTACCAGTCGGTATGATCAATTGCTTCAAAAGTTGCAAAAGGACAGTGTGACATCATTTCCACTTAAAGTACTTCCCATAAGCTTACTTGTCTTTCAAGATTTGATATATCCTTTGGAAGATTCATGGGTCCAATCAGGT ]
[+] EMBL C28635 [ TTATTTCCATACAAGGCAGAGTGCATTTCTCTATCATCTTGGGGTACAAACTATGCCAAAAACTCACCATTGCTTGAACATGAGATTGACTGTAGAATATTTCAAATCAACGTCTATTCATACGGTCCAGTCAAACAAGCAGAAACTTGAAGACCCCACCTTCCATCACTATGTGATATTCTCCAAGAATGTGCTTGCAGTTTCGACTACAATTAATTCAACAGTTATGAACTCCAAGGATTCGGGTAGCATTGTTTTCCATTTGTTCACCGATTCACAAAATTTTTATGCGATGAAGCATTGGTTTGACAGAAATATGTATTTGGAAGCAACTGTACATGTAACTGACATTGAGGGATCACCAGAAGCTCTCTAAGGGATGTTGATTTTCATGATATGGAACTTGTTACGNCCTGCTGNGGAATTCCGTGTCACGGTTCGGT ]
[+] EMBL CF324065 [ TTTCCAGAAGCAAATGAAAACTGAGTACATTTCTACTTTTGGCCATTCACATTTCCTCCTGCCTGACCTTCTTCCTAGCTTGAATAGAGTTGTAGTTCTAGATGATGATTTGATTGTCCAGAAAGACTTGTCATCTCTGTGGAACCTCAATATGGGAGGTAAAGTGGTGGGAGCTATTCAGTTCTGTGAAGTTAAATTAGGACAATTGAAGGCTTACACCGAGGAACGTAATTTTGGCACCAATTCATGTGTGTGGTTATCTGGTCTGAATGTTGTTGAACTGAAAAAATGGAGGGATCTCCACATTACCAGTCGGTATGATCAATTGCTTCAAAAGTTGCAAAAGGACAGTGTGACATCATTTCCACTTAAAGTACTTCCCATAAGCTTACTTGTCTTTCAAGATTTGATATATCCTTTGGAAGATTCATGGGTCCAATCAGGTCTTGGACATGATNTATGGAGTTAGTCAAACCGATATAAAAGGTCTGTTACTCTACACTACAATGGTGTCATGAAACCTTGGCTTGATTTGGGCAT]
consensusID : consensus_7189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[CGAGGATGCCTGCCCCTGCCTAGCTTAATGTGGAACTAACTAGGAGTATTAATTAATTCCTTCCACTAATCACCCATCAGCGCCAACCGGCGGCCACGGCCACCGTCCGCTCCGACGACGACGACAAGTTGCCACTGCTCACTGCTCACTGCTCTGGAAGGTGGTGAAGCAGGTGTCGCTCGGCTTCACTATGAAGGGCCACCACCACCACCATTCCTTGCCGCCGTCGCCGCCGCCCAAGCGCCGGTGTACCGCCCTGGCCGCGGCCGTCCCTGCGCTCGTCGTCTGCTCCATCCTCCTGCCCCTCGTCTTCCTCCTGGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTGTCATCAGCACTGAAATGGGGTTTAGCAAGCACAAGCATCTGGATGGGAGGATGAAGCACAAGCTACTCAAGGTAATGCTGCTTGCTGATTCTGCCCATTGGCTGACTCATAACTCTTAGTCGCCCAGCTTTACTGAAAGCATAAGAGTGCAT]
[+] EMBL AK111030 [CGAGGATGCCTGCCCCTGCCTAGCTTAATGTGGAACTAACTAGGAGTATTAATTAATTCCTTCCACTAATCACCCATCAGCGCCAACCGGCGGCCACGGCCACCGTCCGCTCCGACGACGACGACAAGTTGCCACTGCTCACTGCTCACTGCTCTGGAAGGTGGTGAAGCAGGTGTCGCTCGGCTTCACTATGAAGGGCCACCACCACCACCATTCCTTGCCGCCGTCGCCGCCGCCCAAGCGCCGGTGTACCGCCCTGGCCGCGGCCGTCCCTGCGCTCGTCGTCTGCTCCATCCTCCTGCCCCTCGTCTTCCTCCTGGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTGTCATCAGCACTGAAATGGGGTTTAGCAAGCACAAGCATCTGGATGGGAGGATGAAGCACAAGCTACTCAAGGTAATGCTGCTTGCTGATTCTGCCCATTGGCTGACTCATAACTCTTAGTCGCCCAGCTTTACTGAAAGCATAAGAGTGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7189#0 CCCGAGGATGGAAGACAAGCGTCTTCTTCGTCTTCCTCGCTTGTTCTCTGCCTGCCCCTG 60
consensus_7189#1 ------------------------------------------CGAGGATGCCTGCCCCTG 18
************
consensus_7189#0 CCTAGCTTAATGTGGAACTAACTAGGAGTATTAATTAATTCCTTCCACTAATTACCAA-- 118
consensus_7189#1 CCTAGCTTAATGTGGAACTAACTAGGAGTATTAATTAATTCCTTCCACTAATCACCCATC 78
**************************************************** *** *
consensus_7189#0 -GCGGCAATCGGCGGCCACGGCCAGTGAGGTCACCGTCCGCTCCGACGACGAC---AAGC 174
consensus_7189#1 AGCGCCAACCGGCGGCCACGGCCA---------CCGTCCGCTCCGACGACGACGACAAGT 129
*** *** *************** ******************** ***
consensus_7189#0 TGCCACTGCTCACTGCTC-----TCTCGAGTCTGG--AAGCAGGCGTTGCTCGGCTTCTC 227
consensus_7189#1 TGCCACTGCTCACTGCTCACTGCTCTGGAAGGTGGTGAAGCAGGTGTCGCTCGGCT---- 185
****************** *** ** *** ******* ** ********
consensus_7189#0 TCACTATGAAGGGCCACCA---------TTCCTTGCCGCCGTCGACGCCGCCCAAGCGCC 278
consensus_7189#1 TCACTATGAAGGGCCACCACCACCACCATTCCTTGCCGCCGTCGCCGCCGCCCAAGCGCC 245
******************* **************** ***************
consensus_7189#0 GCTGCACTGCCCTGGCCGCCGCCGTCCCGGCGCTCGTCGTCTGCTCCATCCTCCTGCCCC 338
consensus_7189#1 GGTGTACCGCCCTGGCCGCGGCCGTCCCTGCGCTCGTCGTCTGCTCCATCCTCCTGCCCC 305
* ** ** *********** ******** *******************************
consensus_7189#0 TCGTCTTCCTCCTCGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTG 398
consensus_7189#1 TCGTCTTCCTCCTGGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTG 365
************* **********************************************
consensus_7189#0 TCATCAGCACTGAATTAGGGTTTAGCAAGCACAAGCATCTGGATGGGAGAATGAAGCACA 458
consensus_7189#1 TCATCAGCACTGAAATGGGGTTTAGCAAGCACAAGCATCTGGATGGGAGGATGAAGCACA 425
************** * ******************************** **********
consensus_7189#0 AGCTACTCAAGGATGTTTCTAGAAAGAAAATTCCTGGATCTGATGGGATTTTGGATG--A 516
consensus_7189#1 AGCTACTCAAGG-TAATGCT-GCTTGCTGATTCTGCCCATTGGCTGACTCATAACTCTTA 483
************ * * ** * * **** ** * * * * *
consensus_7189#0 GAAATCTGGTAGTAGATCAAAGTCCAAGAGTGTTTCTACCAAATCAAAAGAAAAGCTCAA 576
consensus_7189#1 GTCGCCCAGCTTTAC-TGAAAGCATAAGAGTGCAT------------------------- 517
* * * ** * **** ******* *
consensus_7189#0 GGGTGTTTTCTCTTTAGTTCAGCTAAAAAATGAGACCAGAAAAAACAAAGAACTTCATAC 636
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ACAAAGAAGATACCAGTTAAAGGACTTATCCTGGAGATCAAAGGATACTACTATTGATAA 696
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GAAAGAGAACCAAGACCAAGAAGTCGAGCATGAGAACCCCAGATCCTGTGAACTTGAATA 756
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TGGTAGCTACTGCCTCTGGTCTGTTGAGTATAAGGAAGTGATGAAAGATTTTATTGTGAA 816
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GAGGCTTAAGGATCAACTTTTCATGGCAAGAGCTCACTATCCTAGTATTGCAAAGCTGAA 876
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GAACCAGGAAACATTTACACGTGAACTGAAACAAAACATCCAAGAGCATGAACGCATGCT 936
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 CAGTGACACCATTGCAGATGCTGATCTTCCACCATTTTTTGCAAAGAAGCTAGAGAAAAT 996
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GGAGCGCACAATTGAAAGAGCCAAGTCTTGTGAAGTCGGCTGCACAAGTGTTGAACGGAA 1056
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ACTTAGGCAGCTACTTGATATAACTGAAGATGAAGCTTATTTCCATACAAGGCAGAGTGC 1116
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ATTTCTCTATCATCTTGGGGTACAAACTATGCCAAAAACTCACCATTGCTTGAACATGAG 1176
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ATTGACAGTAGAATATTTCAAATCAACGTCTATTCATACGGTCCAGTCAAACAAGCAGAA 1236
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ACTTGAAGACCCCACCTTCCATCACTATGTGATATTCTCCAAGAATGTGCTTGCAGTTTC 1296
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GACTACAATTAATTCAACGGTTATGAACTCCAAGGATTCTGGTAGCATTGTTTTCCATTT 1356
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GTTCACCGATTCACAAAATTTTTATGCGATGAAGCATTGGTTTGACAGAAATATGTATTT 1416
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GGAAGCAACTGTACATGTAACTGACATTGAGGATCACCAGAAGCTCTCTAAGGATGTTGA 1476
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TTTTCATGATATGAAACTGTTACGACCTGCTGAGGAATTCCGTGTCACGTTCCGTAATCA 1536
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TTATCAATCTTTCCAGAAGCAAATGAAAACTGAGTACATTTCTACTTTTGGCCATTCACA 1596
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TTTCCTCCTGCCTGACCTTCTTCCTAGCTTGAATAGAGTTGTAGTTCTAGATGATGATTT 1656
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GATTGTCCAGAAAGACTTGTCATCTCTGTGGAACCTCAATATGGGAGGTAAAGTGGTGGG 1716
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 AGCTATTCAGTTCTGTGAAGTTAAATTAGGACAATTGAAGGCTTACACCGAGGAACGTAA 1776
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TTTTGGCACCAATTCATGTGTGTGGTTATCTGGTCTGAATGTTGTTGAACTGAAAAAATG 1836
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GAGGGATCTCCACATTACCAGTCGGTATGATCAATTGCTTCAAAAGTTGCAAAAGGACAG 1896
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TGTGACATCATTTCCACTTAAAGTACTTCCCATAAGCTTACTTGTCTTTCAAGATTTGAT 1956
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ATATCCTTTGGAAGATTCATGGGTCCAATCAGGTCTTGGACATGATNTATGGAGTTAGTC 2016
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 AAACCGATATAAAAGGTCTGTTACTCTACACTACAATGGTGTCATGAAACCTTGGCTTGA 2076
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 TTTGGGCAT 2085
consensus_7189#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||