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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1806 fasta sequence
[TACACGATTGCTCCAGCTAGCTGCACCTGCACATCGCCATGGCCATGGCCGACCTGGAGTTGGAGAAGGTTGCGAGCTTCTTGCTGGCGGCGCTGCTGCCGCTCGTGCTCTTCAAGCTGGCGGCGGCGAAGCGCGGTGGTGGCGATGGCGGCATGAGGCTGCCGCCTGGGCCGTGGCGGCTGCCGGTGATCGGCAACCTGCACCAGATCATGGCGGGTGGCCAGCTCGTGCACCGCACCATGGCCGGCCTGGCGAGGGGGCTCGGCGACGCGCCGCTGCTGTCGCTCAGGCTCGGCGAGGTCCCCATCGTCGTGGCCTCGTCGGCCGACGCCGCGAGGGAGATCATGAGCAGGCACGACGCCAAGTTCGCCACACGGCCGTGGAGCCCCACCGTGCGGGTCCAGATGGTCGACGGCGAGGGCCTCGCGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTGCGCAAGATCACCATGGTGGAGCTGCTCAGCCCGCGCCGCGTCAGGTCGTTCCGCCGCGTGCGGGAGGAGGAGGTCGGCCGCCTCGTCGTCGCCGTCGCCACGGCGGCGACGCGGCGGCCCGGCGAGGCCGCCGTGAACGTCGGCGAGCGGCTCACCGTGCTGATCACCGACATCGCGGTGCGCACGATCATCGGCGACCGGTTCGAGCGGCGGGAGGATTTCCTCGACGCCGCCGCCGAGTGGGTCAAGATCATGTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCAGCGGCACGGTGCGCCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATGGATTACGCTCTCAAGCAGCATGAGGAGAAGAGGGCAGCTGCTGCAGCTGCCGGCGCCGGCGCCGTGGAAGACGATGAGGACATCGTCGACGTGCTTCTCAGGATTCAGAAGGAAGGGGGCCTCGAAGTGCCCCTCACCATGGGCGTCATCAAAGGCGTCATTCGTGACCTTTTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTCGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGCTACGTGATTGTCTTCGAGGAAAGCAATCGGTGTCAGAAGATGATTTGATCGGATTGAAATACTTGAAGCTTGTCATCAAGGAAACCCTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACATTATGGGGTACGACGTGCCCAAGGGTACAAACGTGCTCGTGAACGTCTGGGCAATATGCAGAGATCCTAGGCATTGGGAAAATGCTGAGACATTCATACCAGAGCGATTTGAGGATAGCACCGTAGACTTTAAAGGCACAGACTTTGAGTTCATACCATTTGGAGCAGGACGAAGGATGTGCCCTGGTTTGGCATTTGCGCAGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTAGTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGCTTCA-CA-CAATATGTGTCTCCTGTGA-CCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA-TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAAAAAAAA]
[+] EMBL AK068907 [TACACGATTGCTCCAGCTAGCTGCACCTGCACATCGCCATGGCCATGGCCGACCTGGAGTTGGAGAAGGTTGCGAGCTTCTTGCTGGCGGCGCTGCTGCCGCTCGTGCTCTTCAAGCTGGCGGCGGCGAAGCGCGGTGGTGGCGATGGCGGCATGAGGCTGCCGCCTGGGCCGTGGCGGCTGCCGGTGATCGGCAACCTGCACCAGATCATGGCGGGTGGCCAGCTCGTGCACCGCACCATGGCCGGCCTGGCGAGGGGGCTCGGCGACGCGCCGCTGCTGTCGCTCAGGCTCGGCGAGGTCCCCATCGTCGTGGCCTCGTCGGCCGACGCCGCGAGGGAGATCATGAGCAGGCACGACGCCAAGTTCGCCACACGGCCGTGGAGCCCCACCGTGCGGGTCCAGATGGTCGACGGCGAGGGCCTCGCGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTGCGCAAGATCACCATGGTGGAGCTGCTCAGCCCGCGCCGCGTCAGGTCGTTCCGCCGCGTGCGGGAGGAGGAGGTCGGCCGCCTCGTCGTCGCCGTCGCCACGGCGGCGACGCGGCGGCCCGGCGAGGCCGCCGTGAACGTCGGCGAGCGGCTCACCGTGCTGATCACCGACATCGCGGTGCGCACGATCATCGGCGACCGGTTCGAGCGGCGGGAGGATTTCCTCGACGCCGCCGCCGAGTGGGTCAAGATCATGTCCGGGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCAGCGGCACGGTGCGCCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATGGATTACGCTCTCAAGCAGCATGAGGAGAAGAGGGCAGCTGCTGCAGCTGCCGGCGCCGGCGCCGTGGAAGACGATGAGGACATCGTCGACGTGCTTCTCAGGATTCAGAAGGAAGGGGGCCTCGAAGTGCCCCTCACCATGGGCGTCATCAAAGGCGTCATTCGTGACCTTTTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTCGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGCTACGTGATTGTCTTCGAGGAAAGCAATCGGTGTCAGAAGATGATTTGATCGGATTGAAATACTTGAAGCTTGTCATCAAGGAAACCCTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACATTATGGGGTACGACGTGCCCAAGGGTACAAACGTGCTCGTGAACGTCTGGGCAATATGCAGAGATCCTAGGCATTGGGAAAATGCTGAGACATTCATACCAGAGCGATTTGAGGATAGCACCGTAGACTTTAAAGGCACAGACTTTGAGTTCATACCATTTGGAGCAGGACGAAGGATGTGCCCTGGTTTGGCATTTGCGCAGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTAGTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCGTGTGCCTCTATAGTTTGGCTCGTAACTGCTTCA CA CAATATGTGTCTCCTGTGA CCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAA ]
[+] EMBL CF195897 [ TTGGCATTTGCGCAGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTATTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGAAGAATGATCTTTACCTGGTTCCAAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGCTTCA CA CAATATGTGTCTCCTGTGA CCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAA ]
[+] EMBL BI804442 [ cAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGCTTCACCACCAATATGTGTCTCCTGTGACCCCGTACCTGCCACGTAGCGATCATGAGCATTCCACTTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATAAGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAAAAAAAA]
consensusID : consensus_7204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[GCTGACAAGCCGATATAAGTAGGGTAACTACAGGGGTTATCCCAGTCCCAAATGTTGATTATCGCCGGCCCAGTAAGCGGGGGTAATACCACTCACTATAAGGCGAATTGGGACCGGGGCCCCCCCTTAAAGTACGACGGTATAGATTAGCATTAAAGCGTGGTAACGGCCAAGGTGCCCTGGGCGATGGCGAACCCCCGCAAGATCTTCGAGATGATGGAATACGCTTTCAACCAGCATGAGAAGAAGAGGGCAGATGCTGCAGTTGCCGGCGCAGGCGCCGTGAAAGACAATAAGGACATTGTAGACGTGCTTCTCAGGATTCAGACGGATGGGGGCCTCGAAGTGCCCCTCACCATGGGAGTCATCAAAGGCGTCATTTATGACCTATTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTAGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGATACGTGATTGTCTTCGAGGGAAGCAATCGGTGTCAAAAGATGATTTGATCGGATTGAAATACTTGAAGCATGTCATCAAGGAAACCGTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACAT]
[-] EMBL AW069943 [GCTGACAAGCCGATATAAGTAGGGTAACTACAGGGGTTATCCCAGTCCCAAATGTTGATTATCGCCGGCCCAGTAAGCGGGGGTAATACCACTCACTATAAGGCGAATTGGGACCGGGGCCCCCCCTTAAAGTACGACGGTATAGATTAGCATTAAAGCGTGGTAACGGCCAAGGTGCCCTGGGCGATGGCGAACCCCCGCAAGATCTTCGAGATGATGGAATACGCTTTCAACCAGCATGAGAAGAAGAGGGCAGATGCTGCAGTTGCCGGCGCAGGCGCCGTGAAAGACAATAAGGACATTGTAGACGTGCTTCTCAGGATTCAGACGGATGGGGGCCTCGAAGTGCCCCTCACCATGGGAGTCATCAAAGGCGTCATTTATGACCTATTTGGTGCCGGGAGTGAGACATCAGCTAATACACTCCAATGGACTATGTCCGAGCTAGTGAGGAACCCAAGAGTGATGCAAAAGGCACAAACTGAGATACGTGATTGTCTTCGAGGGAAGCAATCGGTGTCAAAAGATGATTTGATCGGATTGAAATACTTGAAGCATGTCATCAAGGAAACCGTAAGGCTGCATCCTGTAGTGCCACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7204#0 TACACGATTGCTCCAGCTAGCTGCACCTGCACATCGCCATGGCCATGGCCGACCTGGAGT 60
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TGGAGAAGGTTGCGAGCTTCTTGCTGGCGGCGCTGCTGCCGCTCGTGCTCTTCAAGCTGG 120
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 CGGCGGCGAAGCGCGGTGGTGGCGATGGCGGCATGAGGCTGCCGCCTGGGCCGTGGCGGC 180
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TGCCGGTGATCGGCAACCTGCACCAGATCATGGCGGGTGGCCAGCTCGTGCACCGCACCA 240
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TGGCCGGCCTGGCGAGGGGGCTCGGCGACGCGCCGCTGCTGTCGCTCAGGCTCGGCGAGG 300
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TCCCCATCGTCGTGGCCTCGTCGGCCGACGCCGCGAGGGAGATCATGAGCAGGCACGACG 360
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 CCAAGTTCGCCACACGGCCGTGGAGCCCCACCGTGCGGGTCCAGATGGTCGACGGCGAGG 420
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 GCCTCGCGTTCGCGCCCTACGGCGCGCTGTGGCGGCAGCTGCGCAAGATCACCATGGTGG 480
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 AGCTGCTCAGCCCGCGCCGCGTCAGGTCGTTCCGCCGCGTGCGGGAGGAGGAGGTCGGCC 540
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 GCCTCGTCGTCGCCGTCGCCACGGCGGCGACGCGGCGGCCCGGCGAGGCCGCCGTGAACG 600
consensus_7204#1 --------------------------------------GCTGAC-AAGCCGATATAAGTA 21
* * * * **** * *
consensus_7204#0 TCGGCGAGCGGCTCACCGTGCTGATCACCGACATCGCGGTGCGCACGATCATCGGCGACC 660
consensus_7204#1 -----GGGTAACT-ACAGGGGTTATCCCAGTCCCAAATGT-----TGATTATCG----CC 66
* * ** ** * * * *** * * * ** *** **** **
consensus_7204#0 GGTTCGAGCGGCGGGAGGATTTCCTCGACGCCGCCGCCGAGTGGGTCAAGATCATGTCCG 720
consensus_7204#1 GGCCCAGTAAGCGGGGGTAATACCAC----TCACTATAAGGCGAATTGGGACCG-----G 117
** * ***** * * * ** * * * * * * ** * *
consensus_7204#0 GGTTCAGCCTCGGCGACCTGTTCCCGTCGTCGAGGCTGGCCAGCTTCGTCAGCGGCACGG 780
consensus_7204#1 GGCCCCCCCTTAAAGTACGACGGTATAGATTAGCATTAA--AGCGTGGTAACGGCCAAGG 175
** * *** * * * * *** * ** * * ** **
consensus_7204#0 TGCGCCGGGCGGAGGCGAACCACCGCAAGAACTTCGAGCTGATGGATTACGCTCTCAAGC 840
consensus_7204#1 TGCCCTGGGCGATGGCGAACCCCCGCAAGATCTTCGAGATGATGGAATACGCTTTCAACC 235
*** * ***** ******** ******** ******* ******* ****** **** *
consensus_7204#0 AGCATGAGGAGAAGAGGGCAGCTGCTGCAGCTGCCGGCGCCGGCGCCGTGGAAGACGATG 900
consensus_7204#1 AGCATGAGAAGAAGAGGGCAGATGCTGCAGTTGCCGGCGCAGGCGCCGTGAAAGACAATA 295
******** ************ ******** ********* ********* ***** **
consensus_7204#0 AGGACATCGTCGACGTGCTTCTCAGGATTCAGAAGGAAGGGGGCCTCGAAGTGCCCCTCA 960
consensus_7204#1 AGGACATTGTAGACGTGCTTCTCAGGATTCAGACGGATGGGGGCCTCGAAGTGCCCCTCA 355
******* ** ********************** *** **********************
consensus_7204#0 CCATGGGCGTCATCAAAGGCGTCATTCGTGACCTTTTTGGTGCCGGGAGTGAGACATCAG 1020
consensus_7204#1 CCATGGGAGTCATCAAAGGCGTCATTTATGACCTATTTGGTGCCGGGAGTGAGACATCAG 415
******* ****************** ****** *************************
consensus_7204#0 CTAATACACTCCAATGGACTATGTCCGAGCTCGTGAGGAACCCAAGAGTGATGCAAAAGG 1080
consensus_7204#1 CTAATACACTCCAATGGACTATGTCCGAGCTAGTGAGGAACCCAAGAGTGATGCAAAAGG 475
******************************* ****************************
consensus_7204#0 CACAAACTGAGCTACGTGATTGTCTTCGAGGAAAGCAATCGGTGTCAGAAGATGATTTGA 1140
consensus_7204#1 CACAAACTGAGATACGTGATTGTCTTCGAGGGAAGCAATCGGTGTCAAAAGATGATTTGA 535
*********** ******************* *************** ************
consensus_7204#0 TCGGATTGAAATACTTGAAGCTTGTCATCAAGGAAACCCTAAGGCTGCATCCTGTAGTGC 1200
consensus_7204#1 TCGGATTGAAATACTTGAAGCATGTCATCAAGGAAACCGTAAGGCTGCATCCTGTAGTGC 595
********************* **************** *********************
consensus_7204#0 CACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACATTATGGGGTACGACGTGCCCA 1260
consensus_7204#1 CACTGCTTCTTCCGAGAGAATGTCAAGAGACATGTAACAT-------------------- 635
****************************************
consensus_7204#0 AGGGTACAAACGTGCTCGTGAACGTCTGGGCAATATGCAGAGATCCTAGGCATTGGGAAA 1320
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 ATGCTGAGACATTCATACCAGAGCGATTTGAGGATAGCACCGTAGACTTTAAAGGCACAG 1380
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 ACTTTGAGTTCATACCATTTGGAGCAGGACGAAGGATGTGCCCTGGTTTGGCATTTGCGC 1440
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 AGGTTAGCATGGAGCTTGCTCTAGCCTCATTGCTATATCATTTCGACTGGGAACTCCCTA 1500
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 GTGGTGTTGCGCCAAGCAATCTAGACATGGAAGAGGAGATGGGTATCACCATCCGAAGGA 1560
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 AGAATGATCTTTACCTGGTTCCAAAGGTCCATGTGCCTCTATAGTTTGGCTCGTAACTGC 1620
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TTCACACAATATGTGTCTCCTGTGACCCGTACCTGCCAAGTAGCGATCATGAGCATTCCA 1680
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TTGTGTTTCATGCCCTTATGGTGTTATGCTGCTCAACTTTTTTAATGTTTTCTCGAAATA 1740
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 AGTACCATCATAGTTGTTCATGTAACTATAAATTACGAGTTTAATTTGTGTCGTAGTTAA 1800
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 AAAAAA 1806
consensus_7204#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||