cluster # 721

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Oryza sativa
cluster # 721 cluster # 721 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_721#0 length = 166 sequences # 1

consensus_721#1 length = 82 sequences # 1

consensusID : consensus_721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [GATTTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTTTTTTAATAAAGCTTCAACATGGATAAAACATTATCAGGATAAACCGATCAAGTCACACGAATTTTTTCGGAGTACGATTTCCTACTCCTTCAGTCCAT]

[+] EMBL CF291790             [GATTTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTTTTTTAATAAAGCTTCAACATGGATAAAACATTATCAGGATAAACCGATCAAGTCACACGAATTTTTTCGGAGTACGATTTCCTACTCCTTCAGTCCAT]




>consensus_721#0
GATTTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTT
TTTTTTTTTTTTAATAAAGCTTCAACATGGATAAAACATTATCAGGATAAACCGATCAAG
TCACACGAATTTTTTCGGAGTACGATTTCCTACTCCTTCAGTCCAT

consensusID : consensus_721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 82
fasta sequence

                              [AATTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATGTGTTTTTTTTTTTTTTTTTTTTTTGGGATGAAAGCAG]

[+] EMBL CF277947             [AATTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATGTGTTTTTTTTTTTTTTTTTTTTTTGGGATGAAAGCAG]




>consensus_721#1
AATTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATGTGTTTTTTTTTTTTT
TTTTTTTTTGGGATGAAAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_721#0      GATTTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACAT-TGTTTTTTTTTTTT 59
consensus_721#1      -AATTCGCCCTTGCTGTCACGATACGCTACGTAACGGCATGACATGTGTTTTTTTTTTTT 59
                      * ****************************************** **************

consensus_721#0      TTTTTTTTTTTTTAATAAAGCTTCAACATGGATAAAACATTATCAGGATAAACCGATCAA 119
consensus_721#1      TTTTTTTTTTGGGATGAAAGCAG------------------------------------- 82
                     **********   *  *****                                       

consensus_721#0      GTCACACGAATTTTTTCGGAGTACGATTTCCTACTCCTTCAGTCCAT 166
consensus_721#1      -----------------------------------------------