These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1607 fasta sequence [CTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTCACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGTTGTATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCATTGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGCTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCGATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATCGATGTTCTGCAAGAATCAAGAATGCAGTTAACGCCCATC] [+] EMBL OSA491820 [CTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTCACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGTTGTATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCATTGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGTTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTATCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCAATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATC ] [+] EMBL OSA491855 [ GCATACATGATTATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTTACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGCTGTATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCATCGGCCAGATTCTTGCAGGCAGCACACTGCTCCCTATGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCAGACTTCATGATGAACAACAGCAGCTCAGTAGGTTTCAGTCACCTGCTACCTAACTTGCAGACAATATTTCTTGCAGCTGTGGAGGTTGCTTTTGTAGGCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGCAGTGTTTGCAGGGCTAACCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAGTGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACAAATCGGCCCGGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGACGATGGCATTTTCACCACTAGCCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCGATCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGACAGCTACAGCACCAGGATGGGATTGCTTGCCATGAGAAGCCATACAGCTTCTCGGGGTGGTGGAGTGAACCAGGGAAGCTGATTCTTGTTCTTGCGATGCTCTACGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTG ] [-] EMBL CB623166 [ ATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTNTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGCTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGG CCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCCCTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCGATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAATGTGCGATCGATGTTCTGCAAGAATCAAGAATGCAGTTAACGCCCATC] consensusID : consensus_7220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence [AGCTAGAGGCTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCATATTTTTTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGGCAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGATTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGGGTGAGTTTGAGAAGAAGGGGATTGAGAAGATTGGGAAGATACGTAAAACGAGGTGAGCCATTAGCGCATGATTAATTACGTATTAACTATTTAAAATTTTAAAAATGGATTAATATGATTTTTTAAAGCAACTTTCCTATAGAATTTTTTTGCAAAAAACGTATCGTTTAGTAGTTTGGGAAGCGTGCGCGCGGAATACGATGTCCTTTCTCACCCTATGTCACCCGAACGAACGCTCCCTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTNGGTCTCTATTGGTGTTCATGTACATAG] [+] EMBL CB623165 [AGCTAGAGGCTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCATATTTTTTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGGCAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGATTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGGGTGAGTTTGAGAAGAAGGGGATTGAGAAGATTGGGAAGATACGTAAAACGAGGTGAGCCATTAGCGCATGATTAATTACGTATTAACTATTTAAAATTTTAAAAATGGATTAATATGATTTTTTAAAGCAACTTTCCTATAGAATTTTTTTGCAAAAAACGTATCGTTTAGTAGTTTGGGAAGCGTGCGCGCGGAATACGATGTCCTTTCTCACCCTATGTCACCCGAACGAACGCTCCCTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTNGGTCTCTATTGGTGTTCATGTACATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7220#0 ------------------CTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCT 42 consensus_7220#1 AGCTAGAGGCTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCT 60 ****************************************** consensus_7220#0 GCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGC 102 consensus_7220#1 GCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGC 120 ************************************************************ consensus_7220#0 CCGCTTTTGATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTG 162 consensus_7220#1 CCGCTTTTGATTCACTTATCATATTTTTTTATCATTGATATACTTGGTTTTGTTTCCTTG 180 ******************** ****** ******************************** consensus_7220#0 GTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTA 222 consensus_7220#1 GTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTA 240 ************************************************************ consensus_7220#0 TCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGC 282 consensus_7220#1 TCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGC 300 ************************************************************ consensus_7220#0 TCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTT 342 consensus_7220#1 TCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGGCAGTAAGATGTTCCTTTCCTTT 360 ************************************* ********************** consensus_7220#0 CTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTC 402 consensus_7220#1 CTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTC 420 ************************************************************ consensus_7220#0 AGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCC 462 consensus_7220#1 AGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGATTCCCCAAACTCCATCC 480 ******************************************* **************** consensus_7220#0 ATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGT----TTGTGGTGCT 518 consensus_7220#1 ATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGGGTGAGTTTGAGAAGAA 540 ******************************************* ** *** * * consensus_7220#0 GGCATACATGATCATT------ATTCTTGTCACT-GGTTCTCTATTGGTGT----TCATG 567 consensus_7220#1 GGGGATTGAGAAGATTGGGAAGATACGTAAAACGAGGTGAGCCATTAGCGCATGATTAAT 600 ** ** *** ** * * ** *** * *** * * * * consensus_7220#0 TACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCT 627 consensus_7220#1 TACGTATTAACTATTTAAAATTTTAAAAATGGATTAATATG---ATTTTTTAAAGCAACT 657 *** ** * *** ** * ** * *** *** * * * * ** * ** consensus_7220#0 CTCTTCTCGA---TATCGGTCACAGTCTCCTCATTCACAAATGGAGGGTTATTGCCGACA 684 consensus_7220#1 TTCCTATAGAATTTTTTTGCAAAAAACGTATCGTTTAGTAGTTTGGGAAGCGTGCGCGCG 717 ** * * ** * * * * * * ** ** * * * ** *** * consensus_7220#0 AATGAGAGTATGGTTG-------TATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCAT 737 consensus_7220#1 GAATACGATGTCCTTTCTCACCCTATGTCACCCGAACGAACGCTCCCT--TAGTGTTTGT 775 * * * * ** *** * * *** * ** *** * * * * consensus_7220#0 TGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTGATATGGGC 797 consensus_7220#1 GGTGCTGGCATACATGATCATTATTCTTGTCACTNGGTCTCTATTGGTGTTCATGTACAT 835 * * * ** * ** ** ** ** *** * ** * ** * consensus_7220#0 ATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAG 857 consensus_7220#1 AG---------------------------------------------------------- 837 * consensus_7220#0 CGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGCTGTGGA 917 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 GGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGT 977 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 GTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGC 1037 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 AAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACT 1097 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 ATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCA 1157 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 CAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGAT 1217 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 GATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGA 1277 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 AAGGAGATCACTCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGT 1337 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 GATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCA 1397 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 GCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGA 1457 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 ACCAGGGAAACTGATTCTTGTTCTTGCGATGCTCTGCGGGAGGCTCAACTCAAAGGATTC 1517 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 CACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATCGATGTTCTG 1577 consensus_7220#1 ------------------------------------------------------------ consensus_7220#0 CAAGAATCAAGAATGCAGTTAACGCCCATC 1607 consensus_7220#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||