cluster # 7221

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7221 cluster # 7221 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7221#0 length = 1285 sequences # 1

consensus_7221#1 length = 650 sequences # 2
consensus_7221#2 length = 113 sequences # 1

consensusID : consensus_7221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1285
fasta sequence

                              [ATGGCGCACCAGAGGCAGAGAGACACGAGCAGCGAGGAGGAGCTCCCACGTGAGCCGTGGACGGTGGAGAAGGACGTCCACCTCCTCAACAACTTAGCCGCGCATGGCGGCGAGTTCCAACGCGAGCCGTGGGTGGAGAAGGACGACGCCGCGTCGTGGACGGTGGAGAAAGACGACGTCCCGCTCGTCAACAACATCGTCGCGCACGGCGATCCCGAGGGCAGTTCGAACTCGCTCGCCCGATCAGGAGGACATTTGGCCAATGTCCACGAGGGAGCCGGCATGTTTTATCAGCCCAACTTCAAGTACATTTTCTGTGATATGGATGGCACACTGCTGGATAGTAGCGGTCTAGTTCCAGAAACCAACGCTGAGGCCATTAGGGTGGCCAGGTCAAGAGGGGTACAAACAATCATTGCGACAGGAAAGTCCCGCCCTGCTGTTATTGAAGTTCTTGGCAAGGTTAATTTAGCTGGCACAGGTGGTATCGTTTCAGAATCGTCTCCAGGAGTATTTCTTCAGGGTTTGTTAGTTTACGGCGAGGGGGGCCAAAAGTTATATCAACAGAATTTAGATATAGAAGTGTGCAGAGAGGCGCTTCTATACTCTCTGAAGCACAGAGTTGCCCTGGTGGCCTTCAGCCAGGACGACTGCTACACAACGCTTGATGATCATCCTCTGGTGGACTTTTTCCATGTTATGTACCACGAACCAAAGGCAAAGATAATATCAGATGTTGACCATTTTCTGAGTACCATTGACATACAGAAGTTTGTGTTCCTAGAAACTCCTGAAGTGATCTCTTCTGTGCTGAGGCCACACTGGGCGAGGAGGGTTGATGGAAAGGCACAGGTCGTTCAGGCACAGGGTGATGTGCTTGAAGTTGTACCGCTCGGGACTTCCAAAGGAAATGGGGTAAAAATTCTGTTGGAATCACTTTGTGCTAGTCCAGATGAGGTCATGGCACTAGGCGATGGAAAAAACGATAAAGAGATGCTCCAACTTGCCGGCCTTGGTGTCGCCCTCTGCAACGGCTGTGAGGTGACAAAGGTGGTAGCCGACGTCATCGGCGCGAGCAACGACGAAAGCGGCGTGGCACAGGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGCTGGCTTAGCATTTCTACTGTGGTGTGGTAGGGCCTAATATATCTTGCTTGCAGCATCCATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATTCGCTGGTGGATTAATATCATATTTGCT]

[+] EMBL AK069644             [ATGGCGCACCAGAGGCAGAGAGACACGAGCAGCGAGGAGGAGCTCCCACGTGAGCCGTGGACGGTGGAGAAGGACGTCCACCTCCTCAACAACTTAGCCGCGCATGGCGGCGAGTTCCAACGCGAGCCGTGGGTGGAGAAGGACGACGCCGCGTCGTGGACGGTGGAGAAAGACGACGTCCCGCTCGTCAACAACATCGTCGCGCACGGCGATCCCGAGGGCAGTTCGAACTCGCTCGCCCGATCAGGAGGACATTTGGCCAATGTCCACGAGGGAGCCGGCATGTTTTATCAGCCCAACTTCAAGTACATTTTCTGTGATATGGATGGCACACTGCTGGATAGTAGCGGTCTAGTTCCAGAAACCAACGCTGAGGCCATTAGGGTGGCCAGGTCAAGAGGGGTACAAACAATCATTGCGACAGGAAAGTCCCGCCCTGCTGTTATTGAAGTTCTTGGCAAGGTTAATTTAGCTGGCACAGGTGGTATCGTTTCAGAATCGTCTCCAGGAGTATTTCTTCAGGGTTTGTTAGTTTACGGCGAGGGGGGCCAAAAGTTATATCAACAGAATTTAGATATAGAAGTGTGCAGAGAGGCGCTTCTATACTCTCTGAAGCACAGAGTTGCCCTGGTGGCCTTCAGCCAGGACGACTGCTACACAACGCTTGATGATCATCCTCTGGTGGACTTTTTCCATGTTATGTACCACGAACCAAAGGCAAAGATAATATCAGATGTTGACCATTTTCTGAGTACCATTGACATACAGAAGTTTGTGTTCCTAGAAACTCCTGAAGTGATCTCTTCTGTGCTGAGGCCACACTGGGCGAGGAGGGTTGATGGAAAGGCACAGGTCGTTCAGGCACAGGGTGATGTGCTTGAAGTTGTACCGCTCGGGACTTCCAAAGGAAATGGGGTAAAAATTCTGTTGGAATCACTTTGTGCTAGTCCAGATGAGGTCATGGCACTAGGCGATGGAAAAAACGATAAAGAGATGCTCCAACTTGCCGGCCTTGGTGTCGCCCTCTGCAACGGCTGTGAGGTGACAAAGGTGGTAGCCGACGTCATCGGCGCGAGCAACGACGAAAGCGGCGTGGCACAGGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGCTGGCTTAGCATTTCTACTGTGGTGTGGTAGGGCCTAATATATCTTGCTTGCAGCATCCATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATTCGCTGGTGGATTAATATCATATTTGCT]




>consensus_7221#0
ATGGCGCACCAGAGGCAGAGAGACACGAGCAGCGAGGAGGAGCTCCCACGTGAGCCGTGG
ACGGTGGAGAAGGACGTCCACCTCCTCAACAACTTAGCCGCGCATGGCGGCGAGTTCCAA
CGCGAGCCGTGGGTGGAGAAGGACGACGCCGCGTCGTGGACGGTGGAGAAAGACGACGTC
CCGCTCGTCAACAACATCGTCGCGCACGGCGATCCCGAGGGCAGTTCGAACTCGCTCGCC
CGATCAGGAGGACATTTGGCCAATGTCCACGAGGGAGCCGGCATGTTTTATCAGCCCAAC
TTCAAGTACATTTTCTGTGATATGGATGGCACACTGCTGGATAGTAGCGGTCTAGTTCCA
GAAACCAACGCTGAGGCCATTAGGGTGGCCAGGTCAAGAGGGGTACAAACAATCATTGCG
ACAGGAAAGTCCCGCCCTGCTGTTATTGAAGTTCTTGGCAAGGTTAATTTAGCTGGCACA
GGTGGTATCGTTTCAGAATCGTCTCCAGGAGTATTTCTTCAGGGTTTGTTAGTTTACGGC
GAGGGGGGCCAAAAGTTATATCAACAGAATTTAGATATAGAAGTGTGCAGAGAGGCGCTT
CTATACTCTCTGAAGCACAGAGTTGCCCTGGTGGCCTTCAGCCAGGACGACTGCTACACA
ACGCTTGATGATCATCCTCTGGTGGACTTTTTCCATGTTATGTACCACGAACCAAAGGCA
AAGATAATATCAGATGTTGACCATTTTCTGAGTACCATTGACATACAGAAGTTTGTGTTC
CTAGAAACTCCTGAAGTGATCTCTTCTGTGCTGAGGCCACACTGGGCGAGGAGGGTTGAT
GGAAAGGCACAGGTCGTTCAGGCACAGGGTGATGTGCTTGAAGTTGTACCGCTCGGGACT
TCCAAAGGAAATGGGGTAAAAATTCTGTTGGAATCACTTTGTGCTAGTCCAGATGAGGTC
ATGGCACTAGGCGATGGAAAAAACGATAAAGAGATGCTCCAACTTGCCGGCCTTGGTGTC
GCCCTCTGCAACGGCTGTGAGGTGACAAAGGTGGTAGCCGACGTCATCGGCGCGAGCAAC
GACGAAAGCGGCGTGGCACAGGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGC
TGGCTTAGCATTTCTACTGTGGTGTGGTAGGGCCTAATATATCTTGCTTGCAGCATCCAT
TTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATTCG
CTGGTGGATTAATATCATATTTGCT

consensusID : consensus_7221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [TTCTATCATCATATTGCTTCATTTGCTATAAGGGAAAAATGCAGAAGTTTGTGTTCTTAGAAACTCGGGAAGTGATCTCGTCTATGCTGAGGCCACACTGGGCGAGGAGGGTTGATGGAAAGGCACATGTCATTCTCATTCAGGCACAGAGTGATGTGCTTGAAGTTGTGCCGCTCGGGACTTCCAAAGGAAACGGGGTAAAAATTCTGTTGGAATCACTTTGGGCTAGTCCAAATGAGGTACCTAATCCTGTCATCTTACTTTTACCAGCACAATGATTAATTCGCTATACATGTTAGTAAAGGTACTTACATTTTCTTCCCGTTTCATTTAACCAGGTCATGGCACTAGGCGATGGAGAAAACGATAAAGAGATGCTCCAACTTGTCGGCCTCTTGGTTTCGCGCTCTCCAACGGCTGCGAGGTGACAAAGGTGGTAGCCGACGTTATCGGCTCGAGCAACGACGAAAGCAGCGTGGCACAAGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGCTGGCTTAGCGTTTCTATTGTGGTGTGGCATGGCCTAATATATCTTGCTTGCAGCATCTATATTCAAGCGTAACATATTTAAACTTCAATAATTGTATGTGGAAGTTGGAAGTATTATTCTGTGGTGG]

[-] EMBL CB660938             [TTCTATCATCATATTGCTTCATTTGCTATAAGGGAAAAATGCAGAAGTTTGTGTTCTTAGAAACTCGGGAAGTGATCTCGTCTATGCTGAGGCCACACTGGGCGAGGAGGGTTGATGGAAAGGCACATGTCATTCTCATTCAGGCACAGAGTGATGTGCTTGAAGTTGTGCCGCTCGGGACTTCCAAAGGAAACGGGGTAAAAATTCTGTTGGAATCACTTTGGGCTAGTCCAAATGAGGTACCTAATCCTGTCATCTTACTTTTACCAGCACAATGATTAATTCGCTATACATGTTAGTAAAGGTACTTACATTTTCTTCCCGTTTCATTTAACCAGGTCATGGCACTAGGCGATGGAGAAAACGATAAAGAGATGCTCCAACTTGTCGGCCTCTTGGTTTCGCGCTCTCCAACGGCTGCGAGGTGACAAAGGTGGTAGCCGACGTTATCGGCTCGAGCAACGACGAAAGCAGCGTGGCACAAGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGCTGGCTTAGCGTTTCTATTGTGGTGTGGCATGGCCTAATATATCTTGCTTGCAGCATCTATATTCAAGCGTAACATATTTAAACTTCAATAATTGTATGTGGAAGTTGGAAGTATTATTCTGTGGTGG]
[+] EMBL CB660937             [        TCATATTGCTTCATTTGCTATAAGGGAAAAATGCAGAAGTTTGTGTTCTTAGAAACTCGGGAAGTGATCTCGTCTATGCTGAGGCCACACTGGGCGAGGAGGGTTGATGGAAAGGCACATGTCATTCTCATTCAGGCACAGAGTGATGTGCTTGAAGTTGTGCCGCTCGGGACTTCCAAAGGAAACGGGGTAAAAATTCTGTTGGAATCACTTTGGGCTAGTCCAAATGAGGTACCTAATCCTGTCATCTTACTTTTACCAGCACAATGATTAATTCGCTATACATGTTAGTAAAGGTACTTACATTTTCTTCCCGTTTCATTTAACCAGGTCATGGCACTAGGCGATGGAGAAAACGATAAAGAGATGCTCCAACTTGTCGGCCTCTTGGTTTCGCGCTCTCCAACGGCTGCGAGGTGACAAAGGTGGTAGCCGACGTTATCGGCTCGAGCAACGACGAAAGCAGCGTGGCACAAGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGCTGGCTTAGCGTTTCTATTGTGGTGTGGCATGGCCTAATATATCTTGCTTGCAGCATCTATATTCAAGCGTAACATATTTAAACTTCAATAATTGTATGTGGAAGTTGGAAGTATTATTCTGTGGTG ]




>consensus_7221#1
TTCTATCATCATATTGCTTCATTTGCTATAAGGGAAAAATGCAGAAGTTTGTGTTCTTAG
AAACTCGGGAAGTGATCTCGTCTATGCTGAGGCCACACTGGGCGAGGAGGGTTGATGGAA
AGGCACATGTCATTCTCATTCAGGCACAGAGTGATGTGCTTGAAGTTGTGCCGCTCGGGA
CTTCCAAAGGAAACGGGGTAAAAATTCTGTTGGAATCACTTTGGGCTAGTCCAAATGAGG
TACCTAATCCTGTCATCTTACTTTTACCAGCACAATGATTAATTCGCTATACATGTTAGT
AAAGGTACTTACATTTTCTTCCCGTTTCATTTAACCAGGTCATGGCACTAGGCGATGGAG
AAAACGATAAAGAGATGCTCCAACTTGTCGGCCTCTTGGTTTCGCGCTCTCCAACGGCTG
CGAGGTGACAAAGGTGGTAGCCGACGTTATCGGCTCGAGCAACGACGAAAGCAGCGTGGC
ACAAGCCATTTACAAATACCTCTAGAAAATGATTCCACCTAGCTGGCTTAGCGTTTCTAT
TGTGGTGTGGCATGGCCTAATATATCTTGCTTGCAGCATCTATATTCAAGCGTAACATAT
TTAAACTTCAATAATTGTATGTGGAAGTTGGAAGTATTATTCTGTGGTGG

consensusID : consensus_7221#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 113
fasta sequence

                              [GGACGAGACAAGGGGTCCATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATTCGCTGGTGGATTAATATCATATTTGCTGCTTACAG]

[+] EMBL CA764714             [GGACGAGACAAGGGGTCCATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATTCGCTGGTGGATTAATATCATATTTGCTGCTTACAG]




>consensus_7221#2
GGACGAGACAAGGGGTCCATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTG
GAAGTTGGAAGTACTATTCGCTGGTGGATTAATATCATATTTGCTGCTTACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7221#0      ATGGCGCACCAGAGGCAGAGAGACACGAGCAGCGAGGAGGAGCTCCCACGTGAGCCGTGG 60
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      ACGGTGGAGAAGGACGTCCACCTCCTCAACAACTTAGCCGCGCATGGCGGCGAGTTCCAA 120
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      CGCGAGCCGTGGGTGGAGAAGGACGACGCCGCGTCGTGGACGGTGGAGAAAGACGACGTC 180
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      CCGCTCGTCAACAACATCGTCGCGCACGGCGATCCCGAGGGCAGTTCGAACTCGCTCGCC 240
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      CGATCAGGAGGACATTTGGCCAATGTCCACGAGGGAGCCGGCATGTTTTATCAGCCCAAC 300
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      TTCAAGTACATTTTCTGTGATATGGATGGCACACTGCTGGATAGTAGCGGTCTAGTTCCA 360
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      GAAACCAACGCTGAGGCCATTAGGGTGGCCAGGTCAAGAGGGGTACAAACAATCATTGCG 420
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      ACAGGAAAGTCCCGCCCTGCTGTTATTGAAGTTCTTGGCAAGGTTAATTTAGCTGGCACA 480
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      GGTGGTATCGTTTCAGAATCGTCTCCAGGAGTATTTCTTCAGGGTTTGTTAGTTTACGGC 540
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      GAGGGGGGCCAAAAGTTATATCAACAGAATTTAGATATAGAAGTGTGCAGAGAGGCGCTT 600
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ------------------------------------------------------------
                                                                                  

consensus_7221#0      CTATACTCTCTGAAGCACAGAGTTGCCCTGGTGGCCTTCAGCCAGGACGACTGCTACACA 660
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      -------------------TTCTATCATCATATTGCTTCATTTGCTATAAGGGAAAAATG 41
                                                                                  

consensus_7221#0      ACGCTTGATGATCATCCTCTGGTGGACTTTTTCCATGTTATGTACCACGAACCAAAGGCA 720
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      CAGAAGTTTGTGTTCTTAGAAACTCGGGAAGTGATCTCGTCTATGCTGAGGCCACACTGG 101
                                                                                  

consensus_7221#0      AAGATAATATCAGATGTTGACCATTTTCTGAGTACCATTGACATACAGAAGTTTGTGTTC 780
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      GCGAGGAGGGTTGATGGAAAGGCACATGTCATTCTCATTCAGGCACAGAGTGATGTGCTT 161
                                                                                  

consensus_7221#0      CTAGAAACTCCTGAAGTGATCTCTTCTGTGCTGAGGCCACACTGGGCGAGGAGGGTTGAT 840
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      GAAGTTGTGCCGCTCGGGACTTCCAAAGGAAACGGGGTAAAAATTCTGTTGGAATCACTT 221
                                                                                  

consensus_7221#0      GGAAAGGCACAGGTCGTTCAGGCACAGGGTGATGTGCTTGAAGTTGTACCGCTCGGGACT 900
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      TGGGCTAGTCCAAATGAGGTACCTAATCCTGTCATCTTACTTTTACCAGCACAATGATTA 281
                                                                                  

consensus_7221#0      TCCAAAGGAAATGGGGTAAAAATTCTGTTGGAATCACTTTGTGCTAGTCCAGATGAGGTC 960
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ATTCGCTATACATGTTAGTAAAGGTACTTACATTTTCTTCCCGTTTCATTTAACCAGGTC 341
                                                                                  

consensus_7221#0      ATGGCACTAGGCGATGGAAAAAACGATAAAGAGATGCTCCAACTTGCCGGCCT--TGGTG 1018
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ATGGCACTAGGCGATGGAGAAAACGATAAAGAGATGCTCCAACTTGTCGGCCTCTTGGTT 401
                                                                                  

consensus_7221#0      TCGCCCTCTGCAACGGCTGTGAGGTGACAAAGGTGGTAGCCGACGTCATCGGCGCGAGCA 1078
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      TCGCGCTCTCCAACGGCTGCGAGGTGACAAAGGTGGTAGCCGACGTTATCGGCTCGAGCA 461
                                                                                  

consensus_7221#0      ACGACGAAAGCGGCGTGGCACAGGCCATTTACAAATACCTCTAGAAAATGATTCCACCTA 1138
consensus_7221#2      ------------------------------------------------------------
consensus_7221#1      ACGACGAAAGCAGCGTGGCACAAGCCATTTACAAATACCTCTAGAAAATGATTCCACCTA 521
                                                                                  

consensus_7221#0      GCTGGCTTAGCATTTCTACTGTGGTGTGGTAGGGCCTAATATATCTTGCTTGCAGCATCC 1198
consensus_7221#2      ------------------------------------------GGACGAGACAAGGGGTCC 18
consensus_7221#1      GCTGGCTTAGCGTTTCTATTGTGGTGTGGCATGGCCTAATATATCTTGCTTGCAGCATCT 581
                                                                            *  ** 

consensus_7221#0      ATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATT 1258
consensus_7221#2      ATTTGCAAGCGTACCATATTTAAACTTCAATAATTGTACGTGGAAGTTGGAAGTACTATT 78
consensus_7221#1      ATATTCAAGCGTAACATATTTAAACTTCAATAATTGTATGTGGAAGTTGGAAGTATTATT 641
                      ** * ******** ************************ **************** ****

consensus_7221#0      CGCTGGTGGATTAATATCATATTTGCT-------- 1285
consensus_7221#2      CGCTGGTGGATTAATATCATATTTGCTGCTTACAG 113
consensus_7221#1      CTGTGGTGG-------------------------- 650
                      *  ******