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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2034 fasta sequence
[CCCCCCGCGCGCGCGCGCGTTTCGTTCGAACGATCGATGCGCCCCGGAGCACACGGCACGCACCCGCGCCGCGAGAGAAGAGGAAACCAAGCGATGCCGTCGGCCCGTGACACTAACATGGACTTGATGGAAGTCCTCTCGCCGCCGGCCGCCGCACGGGATCATCAGAAGAGCCAGGTTCGTGTCCAGAGGAGCCTCTCAAGCTCTTCTGGGGTGTTTCAGGGATCTCTCACGTTTCTCTTTGTGGAAAAAAAAACTAGGCAAAAAAAGGGTTTGCCTAATGTAGTAAAGCAGGGGGAGTTTGAAAGGGCTCTCTCTCACGTTGGGTAAGCTTGCCACCCGGCCCCCCCAGGTGCACGCCGCCGCGCGTGCGCTACCGCACCAAAGCGCCAGCGTTGTCGTGGACGGACGCATGCCGCCGCCGGCCGCCGTCGCAAGCCTGACGTTACAAGTCCCCGGAGGAGCTCACGATGTCACTTCTCTGGCTACTAGTCCAAGGACCATGGCCGTGCCTGGAACGACTGAACAGCTGACGATTTTCTACTCCGGGTCTATGGTGAAGTTCGACAACGTCCCAAGGGAGAAGATTCGCTATGCGTGCAGGCTGAGGAGGTTATATTCTTCGCTGCAAAGAAGTCTCCAGACGCAGGACACCAGCATGTTCCCCAGCAGCAGCAGCCTGCATATCCAAACAAAAAGAAGAGGATATTCTGTTATCAGGCTCCTGAGAGAGATGCTGATGGTTTGTTCATCCACGAGAACAAAGCCGATGCTTGTTCACAGCGACAGCATCGGAGCCCAGAGGACGGGTACGCCACCATCAAGGAGACGAATCCATGCTCGCGGCAAATCCAGATCGTGCCAAGAGATGTCTCATTGCTGGTGAAGAATGCGTCTCTTGTTAGCTTCCTGGAGAGCCGCAAGCAGAGGTTGGCGAGTGCAGCTTACACTCGCCGTGAGAAATCTCCTGATGAAAAGGACATTTTTCCTACGGCTTTCCCACGAAATAAAACCCCACTCGGCAACACGGAACGGCATAGTGCTTTCACGAACCTGAAGAATATTAACGGAAATCATGACGAGGAGGCACTAGATACCGAGTTGAAGATCTAGCCGCGAAGTTTTGGATTCAGTTTGCGGCACGGGAACCTCTTGCTAATCAAGCACAAGTTTTGGACTCAGTAGGTGGAGTGATGAACTAAGTAGAAACCTAGTGGTGCATTTGGTAGCAAGAGCCTTTTTTTTTCTTATTTTAATTCTGAATTTCTGATGAGGTTTTTTAAG-GCAGTAGTGATGTTCACTCGCA-GTTTCATATGAAACCGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGAT-------ATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAATAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAGACTGGAGCTAAGCGGAGGAGACCGCGCGGTACAGATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATATTATGGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTATTTGGTTTGAAGCCAAATTTTAGCATGCCTAAGAAAATAGGTCATTTCAATAGTGAACTTAGGCTATTTTGGCTTCAATCCAAACATAACTTTGCCTTACTAAAATTAGTCGTGCC]
[+] EMBL AK107003 [CCCCCCGCGCGCGCGCGCGTTTCGTTCGAACGATCGATGCGCCCCGGAGCACACGGCACGCACCCGCGCCGCGAGAGAAGAGGAAACCAAGCGATGCCGTCGGCCCGTGACACTAACATGGACTTGATGGAAGTCCTCTCGCCGCCGGCCGCCGCACGGGATCATCAGAAGAGCCAGGTTCGTGTCCAGAGGAGCCTCTCAAGCTCTTCTGGGGTGTTTCAGGGATCTCTCACGTTTCTCTTTGTGGAAAAAAAAACTAGGCAAAAAAAGGGTTTGCCTAATGTAGTAAAGCAGGGGGAGTTTGAAAGGGCTCTCTCTCACGTTGGGTAAGCTTGCCACCCGGCCCCCCCAGGTGCACGCCGCCGCGCGTGCGCTACCGCACCAAAGCGCCAGCGTTGTCGTGGACGGACGCATGCCGCCGCCGGCCGCCGTCGCAAGCCTGACGTTACAAGTCCCCGGAGGAGCTCACGATGTCACTTCTCTGGCTACTAGTCCAAGGACCATGGCCGTGCCTGGAACGACTGAACAGCTGACGATTTTCTACTCCGGGTCTATGGTGAAGTTCGACAACGTCCCAAGGGAGAAGATTCGCTATGCGTGCAGGCTGAGGAGGTTATATTCTTCGCTGCAAAGAAGTCTCCAGACGCAGGACACCAGCATGTTCCCCAGCAGCAGCAGCCTGCATATCCAAACAAAAAGAAGAGGATATTCTGTTATCAGGCTCCTGAGAGAGATGCTGATGGTTTGTTCATCCACGAGAACAAAGCCGATGCTTGTTCACAGCGACAGCATCGGAGCCCAGAGGACGGGTACGCCACCATCAAGGAGACGAATCCATGCTCGCGGCAAATCCAGATCGTGCCAAGAGATGTCTCATTGCTGGTGAAGAATGCGTCTCTTGTTAGCTTCCTGGAGAGCCGCAAGCAGAGGTTGGCGAGTGCAGCTTACACTCGCCGTGAGAAATCTCCTGATGAAAAGGACATTTTTCCTACGGCTTTCCCACGAAATAAAACCCCACTCGGCAACACGGAACGGCATAGTGCTTTCACGAACCTGAAGAATATTAACGGAAATCATGACGAGGAGGCACTAGATACCGAGTTGAAGATCTAGCCGCGAAGTTTTGGATTCAGTTTGCGGCACGGGAACCTCTTGCTAATCAAGCACAAGTTTTGGACTCAGTAGGTGGAGTGATGAACTAAGTAGAAACCTAGTGGTGCATTTGGTAGCAAGAGCCTTTTTTTTTCTTATTTTAATTCTGAATTTCTGATGAGGTTTTTTAAGTGCAGTAGTGATGTTCACTCGCA GTTTCATATGAAACCGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGATTACATTGATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAATAAAATAC ]
[+] EMBL CB626823 [ TTCTGAATTTCTGATGAGGTTTTTTAAG GCAGTAGTGATGTTCACTCGCA GTTTCATATGAAACCGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGAT ATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAATAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAGACTGGAGCTAAGCGGAGGAGACCGCGCGGTACAGATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATATTATGGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTATTTGGTTTGAAGCCAAATTTTAGCATGCCTAAGAAAATAGGTCATTTCAATAGTGAACTTAGGCTATTTTGGCTTCAATCCAAACATAACTTTGCCTTACTAAAATTAGTCGTGCC]
[+] EMBL CB626822 [ GAGGTTTTTTAAG GCACTTTTGATGTTCACTCGCACGTTTCATATGAAACCGAGGCATCGGCACCCTTTTCTTCTTCTCATTGACGGGACAAAAGGTTTTCGGATTCGTTCGGATTGTTGCCTCTGAT ATCAAATTGCACGGCCCTTTTTGTAACTGAGGATAGCTGAAATAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAATATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGGCACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCGTAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAAACTGGAGCTAAGCGGAGGAGACCGCGCGGTACAAATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCGCCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCGTTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTAAATATTATGGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTATTTGGTTTGAAGCCAAATTTTACCATGC ]
consensusID : consensus_7227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[AGAGGACGAGACAAGGGGCTGGTTTGATTTGAGGCCTAAATTAGACTTACTAATATTTAGCAATTTAAATAGTGCTTAGTGTTTATTTGGTTTGAAGCCAAATTTTAGTATGCCTAAGAAAATAGGTCATTTCAATAGTAAACTTAGCCTATTTTGGCTTTAATCCAAACACAATTTTGCTTTATCAAAATTAATCATGTCAAAACTTACCAAAAAAAAAAAAAAA]
[-] EMBL CA760428 [AGAGGACGAGACAAGGGGCTGGTTTGATTTGAGGCCTAAATTAGACTTACTAATATTTAGCAATTTAAATAGTGCTTAGTGTTTATTTGGTTTGAAGCCAAATTTTAGTATGCCTAAGAAAATAGGTCATTTCAATAGTAAACTTAGCCTATTTTGGCTTTAATCCAAACACAATTTTGCTTTATCAAAATTAATCATGTCAAAACTTACCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7227#0 CCCCCCGCGCGCGCGCGCGTTTCGTTCGAACGATCGATGCGCCCCGGAGCACACGGCACG 60
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CACCCGCGCCGCGAGAGAAGAGGAAACCAAGCGATGCCGTCGGCCCGTGACACTAACATG 120
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GACTTGATGGAAGTCCTCTCGCCGCCGGCCGCCGCACGGGATCATCAGAAGAGCCAGGTT 180
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CGTGTCCAGAGGAGCCTCTCAAGCTCTTCTGGGGTGTTTCAGGGATCTCTCACGTTTCTC 240
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TTTGTGGAAAAAAAAACTAGGCAAAAAAAGGGTTTGCCTAATGTAGTAAAGCAGGGGGAG 300
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TTTGAAAGGGCTCTCTCTCACGTTGGGTAAGCTTGCCACCCGGCCCCCCCAGGTGCACGC 360
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CGCCGCGCGTGCGCTACCGCACCAAAGCGCCAGCGTTGTCGTGGACGGACGCATGCCGCC 420
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GCCGGCCGCCGTCGCAAGCCTGACGTTACAAGTCCCCGGAGGAGCTCACGATGTCACTTC 480
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TCTGGCTACTAGTCCAAGGACCATGGCCGTGCCTGGAACGACTGAACAGCTGACGATTTT 540
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CTACTCCGGGTCTATGGTGAAGTTCGACAACGTCCCAAGGGAGAAGATTCGCTATGCGTG 600
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CAGGCTGAGGAGGTTATATTCTTCGCTGCAAAGAAGTCTCCAGACGCAGGACACCAGCAT 660
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GTTCCCCAGCAGCAGCAGCCTGCATATCCAAACAAAAAGAAGAGGATATTCTGTTATCAG 720
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GCTCCTGAGAGAGATGCTGATGGTTTGTTCATCCACGAGAACAAAGCCGATGCTTGTTCA 780
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CAGCGACAGCATCGGAGCCCAGAGGACGGGTACGCCACCATCAAGGAGACGAATCCATGC 840
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TCGCGGCAAATCCAGATCGTGCCAAGAGATGTCTCATTGCTGGTGAAGAATGCGTCTCTT 900
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GTTAGCTTCCTGGAGAGCCGCAAGCAGAGGTTGGCGAGTGCAGCTTACACTCGCCGTGAG 960
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 AAATCTCCTGATGAAAAGGACATTTTTCCTACGGCTTTCCCACGAAATAAAACCCCACTC 1020
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GGCAACACGGAACGGCATAGTGCTTTCACGAACCTGAAGAATATTAACGGAAATCATGAC 1080
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GAGGAGGCACTAGATACCGAGTTGAAGATCTAGCCGCGAAGTTTTGGATTCAGTTTGCGG 1140
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CACGGGAACCTCTTGCTAATCAAGCACAAGTTTTGGACTCAGTAGGTGGAGTGATGAACT 1200
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 AAGTAGAAACCTAGTGGTGCATTTGGTAGCAAGAGCCTTTTTTTTTCTTATTTTAATTCT 1260
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 GAATTTCTGATGAGGTTTTTTAAGGCAGTAGTGATGTTCACTCGCAGTTTCATATGAAAC 1320
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CGAGGCATCGTCACCCTTTTCTTCTTCTCATTGACGGGAGAAAAGGTTTTCGGATTCGTT 1380
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CGGATTGTTGCCTCTGATATCAGATTGCACGGTCCTTTTTGTAACTGAGGATAGCTGAAA 1440
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TAAAATACTATTTTGTTTAACTTTCCTGTGTAAACAATCATTTTGGTGCAGGGATACAAT 1500
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 ATTGAGGGCCACTATGAAATATTTCCTGTGGATGTAAGAAATGAAGAGTTGGGAAGTGGG 1560
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CACCTTATGTTGAGTTGTAATCCAAATTCATTTGCACTTAATAAAAGCCAGCTTCTGCCG 1620
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TAGTGAAGCGGAGGCCCGTCGCCGGGAGGCTTAGACTGGAGCTAAGCGGAGGAGACCGCG 1680
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CGGTACAGATCGTCATCCCTTTTAGGTTCCACCATATATATATATACCTCTTGTAAATCG 1740
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 CCGTGCGGTGTTGTAACCTCACCCCCGAAATAGTGAAGATATTTTGTTGGCTGGCGCCCG 1800
consensus_7227#1 ------------------------------------------------------------
consensus_7227#0 TTGTTTTTTCTCTCCTGCTTTGGGAGGGTTTTCCACATTA-AATATTATGGGCTGGTTTG 1859
consensus_7227#1 ----------------------------------AGAGGACGAGACAAGGGGCTGGTTTG 26
* * * * * * ***********
consensus_7227#0 GTTTGAGGCCTAAATTAGGCTTACCAATATTTGACAATTTCAATAGTGTTTAGTACCTAT 1919
consensus_7227#1 ATTTGAGGCCTAAATTAGACTTACTAATATTTAGCAATTTAAATAGTGCTTAGTGTTTAT 86
***************** ***** ******* ****** ******* ***** ***
consensus_7227#0 TTGGTTTGAAGCCAAATTTTAGCATGCCTAAGAAAATAGGTCATTTCAATAGTGAACTTA 1979
consensus_7227#1 TTGGTTTGAAGCCAAATTTTAGTATGCCTAAGAAAATAGGTCATTTCAATAGTAAACTTA 146
********************** ****************************** ******
consensus_7227#0 GGCTATTTTGGCTTCAATCCAAACATAACTTTGCCTTACTAAAATTAGTCGTGCC----- 2034
consensus_7227#1 GCCTATTTTGGCTTTAATCCAAACACAATTTTGCTTTATCAAAATTAATCATGTCAAAAC 206
* ************ ********** ** ***** *** ******* ** ** *
consensus_7227#0 --------------------
consensus_7227#1 TTACCAAAAAAAAAAAAAAA 226
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||