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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1394 fasta sequence
[CTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGTNTGGAGATGGCTACAGCGTGCATGGCCAGAAGG-GCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGATTCCAAGCACGGTACTACGAAAATGACCATATACTACTACTACTTGCTGGGTTTTGGCAATAAGTCCTGACAGCAAGAAAGAAGCCTTGTGCATATGATGAAAAGCGTCAACAAAGCCACTCCTCTCCCGATCAGAGCTTGCAGGTTGAGATCAAGTTGGAGGGCAGCATTACCATATTCTTCGTCTTGCACATCATCTTGTCGGAGACCATGTTCTTC-ACCGCACTCTTCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTTCATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATGGATGTTGTGGATGGAGGAGAGTGTTTTGATGCTTAAGTGTGCTAGCGCTAGTGATTTTTGAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGTAATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTGATTATTGAGTAGATTTTTAATGTGTTCAAAAA]
[+] EMBL C93588 [CTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGTNTGGAGATGGCTACAGCGTGCATGGCCAGAAGG GCACACTCAAGCGGA ]
[+] EMBL AK105361 [ TCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAGCGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGATTCCAAGCACGGTACTACGAAAATGACCATATACTACTACTACTTGCTGGGTTTTGGCAATAAGTCCTGACAGCAAGAAAGAAGCCTTGTGCATATGATGAAAAGCGTCAACAAAGCCACTCCTCTCCCGATCAGAGCTTGCAGGTTGAGATCAAGTTGGAGGGCAGCATTACCATATTCTTCGTCTTGCACATCATCTTGTCGGAGACCATGTTCTTC ACCGCACTCTTCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTTCATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATGGATGTTGTGGATGGAGGAGAGTGTTTTGATGCTTAAGTGTGCTAGCGCTAGTGATTTTTGAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGTAATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTG ]
[+] EMBL AU093758 [ GAACAAGTTGNAGGGCANCATTACCATATTCTTCGTCTTGCACATAATCTTGTCGGAGACCATGTTCTTCAACCGCACTCATCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTTCATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATGGATGTTGTGGATGGAGGAGAGTGTTTTGATGCTTAAGTGT NTAGCGCTAGTGATTTTTGAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGTAATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTGATTATTGAGTAGATTTTTAATGTGTTCAAAAA]
consensusID : consensus_7235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1186 fasta sequence
[ATCTCTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAGCGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGGTATGTTGAGGCTTTTACTCCCAGCCTACTTCACCATACGTCACTAAGGATATGCATTGTCGGAGTAGTAGTACTACCAGTACAAGTATTAGTAGCAGTAGTATTAGTATTGAGTAGGAGTAGTATTTGTAGCAATGTTAGGTGACTAATTAGGAGATCATGGCTAAAAATATGGAATGCTCTTTTGGCTGAACTACTATGATGTGGATGGATGGTCTGAACATGTAACAAATGAAAATGGAGTAGCATATGTGCCCTTCTCTCTCTGTAAGCATGGGATGATTGATCAATTTGTTTAATTAATTAAGACC]
[+] EMBL AK069861 [ATCTCTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAGCGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGGTATGTTGAGGCTTTTACTCCCAGCCTACTTCACCATACGTCACTAAGGATATGCATTGTCGGAGTAGTAGTACTACCAGTACAAGTATTAGTAGCAGTAGTATTAGTATTGAGTAGGAGTAGTATTTGTAGCAATGTTAGGTGACTAATTAGGAGATCATGGCTAAAAATATGGAATGCTCTTTTGGCTGAACTACTATGATGTGGATGGATGGTCTGAACATGTAACAAATGAAAATGGAGTAGCATATGTGCCCTTCTCTCTCTGTAAGCATGGGATGATTGATCAATTTGTTTAATTAATTAAGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7235#0 ----CTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATC 56
consensus_7235#1 ATCTCTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATC 60
********************************************************
consensus_7235#0 GCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCC 116
consensus_7235#1 GCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCC 120
************************************************************
consensus_7235#0 CTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGAC 176
consensus_7235#1 CTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGAC 180
************************************************************
consensus_7235#0 GGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGTNTGGAGATGGCTACAG 236
consensus_7235#1 GGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAG 240
******************************************* ***************
consensus_7235#0 CGTGCATGGCCAGAAGG-GCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCG 295
consensus_7235#1 CGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCG 300
***************** ******************************************
consensus_7235#0 CAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTG 355
consensus_7235#1 CAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTG 360
************************************************************
consensus_7235#0 GGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATC 415
consensus_7235#1 GGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATC 420
************************************************************
consensus_7235#0 CATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACG 475
consensus_7235#1 CATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACG 480
************************************************************
consensus_7235#0 GCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGC 535
consensus_7235#1 GCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGC 540
************************************************************
consensus_7235#0 AACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACC 595
consensus_7235#1 AACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACC 600
************************************************************
consensus_7235#0 GTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGG 655
consensus_7235#1 GTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGG 660
************************************************************
consensus_7235#0 TGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCA 715
consensus_7235#1 TGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCA 720
************************************************************
consensus_7235#0 GCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGA 775
consensus_7235#1 GCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGA 780
************************************************************
consensus_7235#0 GCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGA 835
consensus_7235#1 GCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGA 840
************************************************************
consensus_7235#0 CGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGATTCCAAGCACGGTACTACGAAAAT 895
consensus_7235#1 CGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGGT----------ATGTTGAGG---- 886
*********************************** * * * *
consensus_7235#0 GACCATATACTACTACTACTTGCTGGGTTTTGGCAATAAGTCCTGACAGCAAGAAAGAAG 955
consensus_7235#1 ---------CTTTTACTCCCAGCCTACTTC--ACCATACGTC------ACTAAGGATATG 929
** **** * ** ** * *** *** * * * * *
consensus_7235#0 CCTTGTGCATATGATGAAAAGCGTCAACAAAGCCACTCCTCTCCCGATCAGAGCTTGCAG 1015
consensus_7235#1 CATTGTCGGAGTAGT----AGTACTACCAGTACAAGTATT------AGTAGCAGTAGTA- 978
* **** * * ** * ** * * * * * ** * * *
consensus_7235#0 GTTGAGATCAAGTTGGAGGGCAGCATTACCATATTCTTCGTCTTGCACATCATCTTGTCG 1075
consensus_7235#1 -TTAGTATTGAGTAGGA--GTAGTATTTGTAGCAATGTTAGGTGACTAATTA-------G 1028
** ** *** *** * ** *** * * * * ** * *
consensus_7235#0 GAGACCATGTTCTTCACCGCACTCTTCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTT 1135
consensus_7235#1 GAGATCATGGCTAAAAATATGGAATGC-TCTTTTGGCTGAACTA--CTATGATGTGGATG 1085
**** **** * * * **** * * * *** * *** * *
consensus_7235#0 CATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATG 1195
consensus_7235#1 GATGGTCTGAACATGTAACAAATGAAAATGGAGTAGCATATGTGCCCTTCTCTCTCTGTA 1145
** ** * **** ** * * * *** ******** *
consensus_7235#0 GATGTTGTG-GATGGAGGAGAGTGTTTTGATGCTTAAGTGTGCTAGCGCTAGTGATTTTT 1254
consensus_7235#1 AGCATGGGATGATTGATCAATTTGTTTAATTAATTAAGACC------------------- 1186
* * *** ** * ***** * *****
consensus_7235#0 GAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGT 1314
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 AATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTGATTATTGAGTAG 1374
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 ATTTTTAATGTGTTCAAAAA 1394
consensus_7235#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||