These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1956 fasta sequence [CCCCGCGAAGCGACCATGGCCATCCCTCCCCTCGCCGTCAGCGGGGTCGCCGTCGCCACCCTCGCCGTCCTCGGCCTCGCCGTCTTCGCCTGCCGGCGGTGGCGGCGGGGCGCGTCCCCCGCGCCCCCACCTCCCGCTTCCTCCCAGGATGATGATATTAACATGCCTCTCATATCTGACAATTTGGATGACTATTCAGTCTCGAGCAATAGTAGTACTGTCGATGAATCAGGAATTCGGATTGATAGGATTATCACTTCACCTAAGACTCATGGCATTGTTGGAAAAGGGGCAACCTATCCCACTGAATCTCATGTTATTGAAGGAGAAACTCATGTAATTGATGTTACAAACAGTAAAACGGAAGAGCTCTATTTGGGAAATACGCTTAAGCGTCCAGCTGTGGCAAATGGGCCAACACCTGATGTGAAGCACATAAGAAGGGATTCTGGAGAGAGTAATCACAATGGCACCATTCCTGACATTATAGTTGGAAGCAACCTAGCTTTGGAGGTCATAGCTGGCCCATCTCATGGAATAAACCACTATATGCAGTCAGGTAACAAGTCCATGCTACCCGTGACTCTTGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTGAGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTCGAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTGTGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGACGGTGCTGCAATAGCTGCCAGCAGGATTCTTCCACAGAACATTGCAAACATTTTGTCTCAACAGGAAACAAAAGAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACTGAAGCTGCACTCCATCATCAGTATGAGGGCTGCACAGCAACTATCCTTCTGATTTGGTTCGACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGTGAATTGGTTAAAAGAAATGTTTATGAACTTTAAATTCTG] [+] EMBL AK071374 [CCCCGCGAAGCGACCATGGCCATCCCTCCCCTCGCCGTCAGCGGGGTCGCCGTCGCCACCCTCGCCGTCCTCGGCCTCGCCGTCTTCGCCTGCCGGCGGTGGCGGCGGGGCGCGTCCCCCGCGCCCCCACCTCCCGCTTCCTCCCAGGATGATGATATTAACATGCCTCTCATATCTGACAATTTGGATGACTATTCAGTCTCGAGCAATAGTAGTACTGTCGATGAATCAGGAATTCGGATTGATAGGATTATCACTTCACCTAAGACTCATGGCATTGTTGGAAAAGGGGCAACCTATCCCACTGAATCTCATGTTATTGAAGGAGAAACTCATGTAATTGATGTTACAAACAGTAAAACGGAAGAGCTCTATTTGGGAAATACGCTTAAGCGTCCAGCTGTGGCAAATGGGCCAACACCTGATGTGAAGCACATAAGAAGGGATTCTGGAGAGAGTAATCACAATGGCACCATTCCTGACATTATAGTTGGAAGCAACCTAGCTTTGGAGGTCATAGCTGGCCCATCTCATGGAATAAACCACTATATGCAGTCAGGTAACAAGTCCATGCTACCCGTGACTCTTGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTGAGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTCGAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTGTGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGACGGTGCTGCAATAGCTGCCAGCAGGATTCTTCCACAGAACATTGCAAACATTTTGTCTCAACAGGAAACAAAAGAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACTGAAGCTGCACTCCATCATCAGTATGAGGGCTGCACAGCAACTATCCTTCTGATTTGGTTCGACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGTGAATTGGTTAAAAGAAATGTT ] [+] EMBL AK060622 [ ATGCTACCCGTGACTCTTGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTGAGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTCGAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTGTGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGATGGTGCTGCAATAGCTGCCAGCAGGATTCTTCCACAGAACATTGCAAACATTTTGTCTCAACAGGAAACAAAAGAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACTGAAGCTGCACTCCATCATCA GGCTGCACAGCAACTATCCTTCTGATTTGGTTCGACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAGAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGTGAATTGGTTAAAAGAAATGTTTATGAACTTTAAATTCTG] [-] EMBL CB664137 [ TATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAG ] consensusID : consensus_7236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CTTTGCAGGTCAAAACTGCCCCCTCTCATGAAATAACCCCCTATATGCACTCAGGTACCAAGTCCATGCTAACTCGTGACTCTGGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCCCAGATTGCCTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATTGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTAAGTTATAACCGCTTTTGTTTTTCAGTGTGTCCTTTCAAGTGTACTGAAGATTTTTATAACTAATTTATAGTAGAATTGGTCTTTTATTGCTTATGGTCCAGCATTATTATTCATCTGATGGTTAATGCTTTTATGTTCCCATATCATTCCGCTTGAAATGAAACCCCTGTGCATTTTTTTTTTTTCATATAATCCAACTATACCTAATTCAAATTGGCAAACATGTTACCACACTCGGCTTTTCTGTTTTCTTGCTAGCTGTTGACATTTCAGTTCATATGCTGGCCTATTTGGTTCCACATGTTTGCCATGCCATAGAAACTGGAGCATATATAAAAAAAAAAAAAAAA] [-] EMBL CA760332 [CTTTGCAGGTCAAAACTGCCCCCTCTCATGAAATAACCCCCTATATGCACTCAGGTACCAAGTCCATGCTAACTCGTGACTCTGGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCCCAGATTGCCTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATTGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTAAGTTATAACCGCTTTTGTTTTTCAGTGTGTCCTTTCAAGTGTACTGAAGATTTTTATAACTAATTTATAGTAGAATTGGTCTTTTATTGCTTATGGTCCAGCATTATTATTCATCTGATGGTTAATGCTTTTATGTTCCCATATCATTCCGCTTGAAATGAAACCCCTGTGCATTTTTTTTTTTTCATATAATCCAACTATACCTAATTCAAATTGGCAAACATGTTACCACACTCGGCTTTTCTGTTTTCTTGCTAGCTGTTGACATTTCAGTTCATATGCTGGCCTATTTGGTTCCACATGTTTGCCATGCCATAGAAACTGGAGCATATATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7236#0 CCCCGCGAAGCGACCATGGCCATCCCTCCCCTCGCCGTCAGCGGGGTCGCCGTCGCCACC 60 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 CTCGCCGTCCTCGGCCTCGCCGTCTTCGCCTGCCGGCGGTGGCGGCGGGGCGCGTCCCCC 120 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 GCGCCCCCACCTCCCGCTTCCTCCCAGGATGATGATATTAACATGCCTCTCATATCTGAC 180 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 AATTTGGATGACTATTCAGTCTCGAGCAATAGTAGTACTGTCGATGAATCAGGAATTCGG 240 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 ATTGATAGGATTATCACTTCACCTAAGACTCATGGCATTGTTGGAAAAGGGGCAACCTAT 300 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 CCCACTGAATCTCATGTTATTGAAGGAGAAACTCATGTAATTGATGTTACAAACAGTAAA 360 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 ACGGAAGAGCTCTATTTGGGAAATACGCTTAAGCGTCCAGCTGTGGCAAATGGGCCAACA 420 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 CCTGATGTGAAGCACATAAGAAGGGATTCTGGAGAGAGTAATCACAATGGCACCATTCCT 480 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 GACATTATAGTTGGAAGCAACCTAGCTTTGGAGGTCATAGCTGGCCCATCTCATGGAATA 540 consensus_7236#1 -------------------------CTTTGCAGGTCAAAACTGCCCCCTCTCATGAAATA 35 ***** ****** * *** *** ******* **** consensus_7236#0 AACCACTATATGCAGTCAGGTAACAAGTCCATGCTA-CCCGTGACTCTTGGAAGGGTTCC 599 consensus_7236#1 ACCCCCTATATGCACTCAGGTACCAAGTCCATGCTAACTCGTGACTCTGGGAAGGGTTCC 95 * ** ********* ******* ************* * ********* *********** consensus_7236#0 TCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTG 659 consensus_7236#1 TCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCCCAGATTGCCTG 155 ************************************************ ******* *** consensus_7236#0 GAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAAT-GGAACATTTT 718 consensus_7236#1 GAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATTGGAACATTTT 215 ************************************************* ********** consensus_7236#0 TGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTG 778 consensus_7236#1 TGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTG 275 ************************************************************ consensus_7236#0 AACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTG 838 consensus_7236#1 AACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGT-------A 328 **************************************************** consensus_7236#0 AGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTC 898 consensus_7236#1 AGTTATA--ACCGCTTTTGTTTTTCAGT--GTGTCCTTTCAAGTGTACTGAAGATTTTTA 384 ** ** * *** * * *** ** * ** * * *** * consensus_7236#0 GAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTG 958 consensus_7236#1 TAACT-------AATTTATAGTAGAATTGGTCTTTTATTGCTTATGGTCCAGCATTATTA 437 **** ** ** * ** *** * *** * * ** * consensus_7236#0 TGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGACGGTGCTGCAATAG 1018 consensus_7236#1 TTCATCTGATGGTTAATGCTTTTATGTTCCCATATCATTCCGC---TTGAAATGAAACCC 494 * * * * * * ** *** *** * * ** ** consensus_7236#0 CTGCCAGCAGGATTCTTCCACAGAACATTGCAAACAT-TTTGTCTCAACAGGAAACAAAA 1077 consensus_7236#1 CTGT--GCATTTTTTTTTTTTCATATAATCCAACTATACCTAATTCAAATTGGCAAACAT 552 *** *** ** ** * * * *** ** * **** * * * * consensus_7236#0 GAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACT 1137 consensus_7236#1 GTTACCACACTCGGCTTTTCT-GTTTTCTTGCTAGCTGTTGACATTTCAGTTCATATGCT 611 * * ** * * ** * * * * ***** * * *** ** consensus_7236#0 GAAGCTGCACTCCATCATCAGTATGAGGGCTGCACAGCAACTATCCTTCTGATTTGGTTC 1197 consensus_7236#1 GG---CCTATTTGGT--TCCACATGTTTGCCATGCCATAG--AAACTGGAGCATATATAA 664 * * * * ** *** ** * * * ** * * * consensus_7236#0 GACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATG 1257 consensus_7236#1 AAAAAAAAAAAAAA---------------------------------------------- 678 * * ** ** * consensus_7236#0 AGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAA 1317 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 CGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGA 1377 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 CTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGC 1437 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 TCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTT 1497 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 ATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTT 1557 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 GAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTG 1617 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 TTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTG 1677 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 GACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGA 1737 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 TCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTT 1797 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 AATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGT 1857 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 TCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGT 1917 consensus_7236#1 ------------------------------------------------------------ consensus_7236#0 GAATTGGTTAAAAGAAATGTTTATGAACTTTAAATTCTG 1956 consensus_7236#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||