These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1341 fasta sequence [TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCCAACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAATGGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGAAGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAATTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTTTTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAGAAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAAGATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTTCTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTTTTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATAATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAATGTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAGCACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGACACTCAAATTTAGTATTGTGAA] [+] EMBL AK121895 [TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCCAACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAATGGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGAAGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAATTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTTTTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAGAAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAAGATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTTCTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTTTTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATAATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAATGTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAGCACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGACACTCAAATTTAGTATTGTGAA] [+] EMBL BE607435 [ GGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCC ] consensusID : consensus_7238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF310840 [GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU161811 [AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7238#0 TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCC 60 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 AACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAAT 120 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 GGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGA 180 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 AGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAA 240 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 TTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTT 300 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 TTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAG 360 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 AAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAA 420 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 GATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTT 480 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 CTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTT 540 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 TTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATA 600 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 ATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAAT 660 consensus_7238#1 ------------------------------------------------------------ consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 GTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAG 720 consensus_7238#1 -----------------------------------------------------------G 1 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 CACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT 780 consensus_7238#1 CACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT 61 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACC-TTGTTGTGTCTGTTTATGTAAC 839 consensus_7238#1 GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAAC 121 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 TGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAG 899 consensus_7238#1 TGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAG 181 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 CTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCC 959 consensus_7238#1 CTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCC 241 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 TGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTA 1019 consensus_7238#1 TGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTA 301 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 TCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGC 1079 consensus_7238#1 TTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGC 361 consensus_7238#2 ------------------------------------------------------------ consensus_7238#0 AGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTC 1139 consensus_7238#1 AGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTC 421 consensus_7238#2 ----AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTC 56 ************** ************ ****************** ******** consensus_7238#0 AGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATG 1199 consensus_7238#1 AGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATG 481 consensus_7238#2 AGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTG 116 **** ******************************************* * ****** ** consensus_7238#0 ATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCC 1259 consensus_7238#1 ATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCC 541 consensus_7238#2 ATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCC 176 ************ ********************* **** ******************** consensus_7238#0 CTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGA 1319 consensus_7238#1 CTTTTAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 568 consensus_7238#2 CTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 217 ***** * * * * * * consensus_7238#0 CACTCAAATTTAGTATTGTGAA 1341 consensus_7238#1 ---------------------- consensus_7238#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||